Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 4928 | 15007;15008;15009 | chr2:178735664;178735663;178735662 | chr2:179600391;179600390;179600389 |
N2AB | 4611 | 14056;14057;14058 | chr2:178735664;178735663;178735662 | chr2:179600391;179600390;179600389 |
N2A | 3684 | 11275;11276;11277 | chr2:178735664;178735663;178735662 | chr2:179600391;179600390;179600389 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs758924238 | -1.664 | 0.627 | D | 0.628 | 0.356 | 0.536051623013 | gnomAD-2.1.1 | 8.05E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.78E-05 | 0 |
L/F | rs758924238 | -1.664 | 0.627 | D | 0.628 | 0.356 | 0.536051623013 | gnomAD-4.0.0 | 3.42118E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 4.49727E-06 | 0 | 0 |
L/R | rs1347273297 | None | 0.627 | D | 0.678 | 0.58 | 0.823228597577 | gnomAD-4.0.0 | 3.18286E-06 | None | None | None | None | N | None | 0 | 2.28676E-05 | None | 0 | 0 | None | 0 | 0 | 2.85817E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.4747 | ambiguous | 0.5103 | ambiguous | -2.344 | Highly Destabilizing | 0.116 | N | 0.582 | neutral | None | None | None | None | N |
L/C | 0.5987 | likely_pathogenic | 0.6345 | pathogenic | -1.616 | Destabilizing | 0.944 | D | 0.625 | neutral | None | None | None | None | N |
L/D | 0.9266 | likely_pathogenic | 0.9468 | pathogenic | -2.092 | Highly Destabilizing | 0.69 | D | 0.698 | prob.neutral | None | None | None | None | N |
L/E | 0.7585 | likely_pathogenic | 0.8044 | pathogenic | -1.885 | Destabilizing | 0.527 | D | 0.694 | prob.neutral | None | None | None | None | N |
L/F | 0.172 | likely_benign | 0.1954 | benign | -1.4 | Destabilizing | 0.627 | D | 0.628 | neutral | D | 0.607983544 | None | None | N |
L/G | 0.769 | likely_pathogenic | 0.8065 | pathogenic | -2.849 | Highly Destabilizing | 0.241 | N | 0.681 | prob.neutral | None | None | None | None | N |
L/H | 0.4879 | ambiguous | 0.5381 | ambiguous | -2.011 | Highly Destabilizing | 0.928 | D | 0.667 | neutral | D | 0.752706044 | None | None | N |
L/I | 0.0682 | likely_benign | 0.0716 | benign | -0.903 | Destabilizing | 0.001 | N | 0.175 | neutral | N | 0.469810259 | None | None | N |
L/K | 0.6337 | likely_pathogenic | 0.6872 | pathogenic | -1.749 | Destabilizing | 0.527 | D | 0.669 | neutral | None | None | None | None | N |
L/M | 0.1341 | likely_benign | 0.1425 | benign | -0.848 | Destabilizing | 0.69 | D | 0.639 | neutral | None | None | None | None | N |
L/N | 0.6657 | likely_pathogenic | 0.7209 | pathogenic | -2.008 | Highly Destabilizing | 0.527 | D | 0.714 | prob.delet. | None | None | None | None | N |
L/P | 0.6612 | likely_pathogenic | 0.7163 | pathogenic | -1.362 | Destabilizing | 0.627 | D | 0.712 | prob.delet. | D | 0.65436035 | None | None | N |
L/Q | 0.4573 | ambiguous | 0.4904 | ambiguous | -1.883 | Destabilizing | 0.69 | D | 0.667 | neutral | None | None | None | None | N |
L/R | 0.5143 | ambiguous | 0.5626 | ambiguous | -1.477 | Destabilizing | 0.627 | D | 0.678 | prob.neutral | D | 0.676680096 | None | None | N |
L/S | 0.62 | likely_pathogenic | 0.6661 | pathogenic | -2.747 | Highly Destabilizing | 0.005 | N | 0.516 | neutral | None | None | None | None | N |
L/T | 0.4444 | ambiguous | 0.4781 | ambiguous | -2.381 | Highly Destabilizing | 0.241 | N | 0.582 | neutral | None | None | None | None | N |
L/V | 0.0984 | likely_benign | 0.1022 | benign | -1.362 | Destabilizing | 0.003 | N | 0.183 | neutral | N | 0.516502007 | None | None | N |
L/W | 0.4136 | ambiguous | 0.4529 | ambiguous | -1.6 | Destabilizing | 0.981 | D | 0.654 | neutral | None | None | None | None | N |
L/Y | 0.4341 | ambiguous | 0.4888 | ambiguous | -1.344 | Destabilizing | 0.818 | D | 0.695 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.