Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 4945 | 15058;15059;15060 | chr2:178735613;178735612;178735611 | chr2:179600340;179600339;179600338 |
N2AB | 4628 | 14107;14108;14109 | chr2:178735613;178735612;178735611 | chr2:179600340;179600339;179600338 |
N2A | 3701 | 11326;11327;11328 | chr2:178735613;178735612;178735611 | chr2:179600340;179600339;179600338 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/P | None | None | 1.0 | D | 0.919 | 0.832 | 0.861823502751 | gnomAD-4.0.0 | 1.5918E-06 | None | None | None | None | N | None | 0 | 2.28728E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
L/V | None | None | 0.767 | N | 0.42 | 0.387 | 0.688782367926 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 3.66327E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.5528 | ambiguous | 0.6177 | pathogenic | -2.715 | Highly Destabilizing | 0.997 | D | 0.745 | deleterious | None | None | None | None | N |
L/C | 0.6508 | likely_pathogenic | 0.7099 | pathogenic | -2.127 | Highly Destabilizing | 1.0 | D | 0.842 | deleterious | None | None | None | None | N |
L/D | 0.9976 | likely_pathogenic | 0.9984 | pathogenic | -3.648 | Highly Destabilizing | 1.0 | D | 0.926 | deleterious | None | None | None | None | N |
L/E | 0.977 | likely_pathogenic | 0.9834 | pathogenic | -3.341 | Highly Destabilizing | 1.0 | D | 0.897 | deleterious | None | None | None | None | N |
L/F | 0.2092 | likely_benign | 0.2164 | benign | -1.725 | Destabilizing | 0.999 | D | 0.787 | deleterious | N | 0.413505311 | None | None | N |
L/G | 0.931 | likely_pathogenic | 0.95 | pathogenic | -3.281 | Highly Destabilizing | 1.0 | D | 0.897 | deleterious | None | None | None | None | N |
L/H | 0.9299 | likely_pathogenic | 0.9465 | pathogenic | -3.051 | Highly Destabilizing | 1.0 | D | 0.909 | deleterious | D | 0.580176002 | None | None | N |
L/I | 0.0947 | likely_benign | 0.0946 | benign | -1.002 | Destabilizing | 0.992 | D | 0.655 | neutral | N | 0.517730751 | None | None | N |
L/K | 0.9677 | likely_pathogenic | 0.9779 | pathogenic | -2.291 | Highly Destabilizing | 1.0 | D | 0.897 | deleterious | None | None | None | None | N |
L/M | 0.1203 | likely_benign | 0.1393 | benign | -1.229 | Destabilizing | 1.0 | D | 0.764 | deleterious | None | None | None | None | N |
L/N | 0.9825 | likely_pathogenic | 0.988 | pathogenic | -3.011 | Highly Destabilizing | 1.0 | D | 0.927 | deleterious | None | None | None | None | N |
L/P | 0.9881 | likely_pathogenic | 0.9923 | pathogenic | -1.567 | Destabilizing | 1.0 | D | 0.919 | deleterious | D | 0.622534494 | None | None | N |
L/Q | 0.9007 | likely_pathogenic | 0.9249 | pathogenic | -2.677 | Highly Destabilizing | 1.0 | D | 0.927 | deleterious | None | None | None | None | N |
L/R | 0.9227 | likely_pathogenic | 0.9423 | pathogenic | -2.337 | Highly Destabilizing | 1.0 | D | 0.923 | deleterious | D | 0.622534494 | None | None | N |
L/S | 0.9036 | likely_pathogenic | 0.9315 | pathogenic | -3.491 | Highly Destabilizing | 1.0 | D | 0.891 | deleterious | None | None | None | None | N |
L/T | 0.7204 | likely_pathogenic | 0.787 | pathogenic | -3.028 | Highly Destabilizing | 0.999 | D | 0.827 | deleterious | None | None | None | None | N |
L/V | 0.0899 | likely_benign | 0.0935 | benign | -1.567 | Destabilizing | 0.767 | D | 0.42 | neutral | N | 0.518154053 | None | None | N |
L/W | 0.7135 | likely_pathogenic | 0.7473 | pathogenic | -2.15 | Highly Destabilizing | 1.0 | D | 0.884 | deleterious | None | None | None | None | N |
L/Y | 0.8003 | likely_pathogenic | 0.8156 | pathogenic | -1.946 | Destabilizing | 1.0 | D | 0.841 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.