Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5000 | 15223;15224;15225 | chr2:178734926;178734925;178734924 | chr2:179599653;179599652;179599651 |
N2AB | 4683 | 14272;14273;14274 | chr2:178734926;178734925;178734924 | chr2:179599653;179599652;179599651 |
N2A | 3756 | 11491;11492;11493 | chr2:178734926;178734925;178734924 | chr2:179599653;179599652;179599651 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs369933152 | -0.201 | 0.999 | N | 0.613 | 0.392 | None | gnomAD-2.1.1 | 1.13302E-04 | None | None | None | None | N | None | 1.17391E-03 | 2.89E-05 | None | 0 | 0 | None | 0 | None | 0 | 1.61E-05 | 0 |
R/C | rs369933152 | -0.201 | 0.999 | N | 0.613 | 0.392 | None | gnomAD-3.1.2 | 3.15424E-04 | None | None | None | None | N | None | 1.0376E-03 | 6.55E-05 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 9.5511E-04 |
R/C | rs369933152 | -0.201 | 0.999 | N | 0.613 | 0.392 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 8E-04 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/C | rs369933152 | -0.201 | 0.999 | N | 0.613 | 0.392 | None | gnomAD-4.0.0 | 7.13735E-05 | None | None | None | None | N | None | 9.59795E-04 | 6.71727E-05 | None | 0 | 6.71892E-05 | None | 0 | 1.6518E-04 | 2.12146E-05 | 2.20138E-05 | 1.28263E-04 |
R/G | None | None | 0.911 | D | 0.565 | 0.446 | 0.468003879618 | gnomAD-4.0.0 | 6.85424E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.16241E-05 | 0 |
R/H | rs377062348 | -1.159 | 0.066 | N | 0.348 | 0.177 | None | gnomAD-2.1.1 | 2.19E-05 | None | None | None | None | N | None | 0 | 2.89E-05 | None | 0 | 0 | None | 3.31E-05 | None | 0 | 3.22E-05 | 0 |
R/H | rs377062348 | -1.159 | 0.066 | N | 0.348 | 0.177 | None | gnomAD-3.1.2 | 5.26E-05 | None | None | None | None | N | None | 2.41E-05 | 2.61917E-04 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
R/H | rs377062348 | -1.159 | 0.066 | N | 0.348 | 0.177 | None | gnomAD-4.0.0 | 2.42061E-05 | None | None | None | None | N | None | 2.67073E-05 | 8.39913E-05 | None | 0 | 4.47688E-05 | None | 1.56597E-05 | 0 | 1.44255E-05 | 1.21063E-04 | 1.6038E-05 |
R/P | None | None | 0.986 | D | 0.617 | 0.422 | 0.317667799068 | gnomAD-4.0.0 | 1.37079E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.80109E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.4541 | ambiguous | 0.5099 | ambiguous | -0.323 | Destabilizing | 0.525 | D | 0.567 | neutral | None | None | None | None | N |
R/C | 0.1597 | likely_benign | 0.1686 | benign | -0.319 | Destabilizing | 0.999 | D | 0.613 | neutral | N | 0.508574834 | None | None | N |
R/D | 0.7553 | likely_pathogenic | 0.7972 | pathogenic | 0.08 | Stabilizing | 0.842 | D | 0.588 | neutral | None | None | None | None | N |
R/E | 0.396 | ambiguous | 0.443 | ambiguous | 0.185 | Stabilizing | 0.842 | D | 0.619 | neutral | None | None | None | None | N |
R/F | 0.5093 | ambiguous | 0.5453 | ambiguous | -0.334 | Destabilizing | 0.974 | D | 0.617 | neutral | None | None | None | None | N |
R/G | 0.3752 | ambiguous | 0.4335 | ambiguous | -0.594 | Destabilizing | 0.911 | D | 0.565 | neutral | D | 0.601005943 | None | None | N |
R/H | 0.0774 | likely_benign | 0.0775 | benign | -1.078 | Destabilizing | 0.066 | N | 0.348 | neutral | N | 0.452814559 | None | None | N |
R/I | 0.2753 | likely_benign | 0.3085 | benign | 0.382 | Stabilizing | 0.974 | D | 0.621 | neutral | None | None | None | None | N |
R/K | 0.1162 | likely_benign | 0.1205 | benign | -0.294 | Destabilizing | 0.688 | D | 0.627 | neutral | None | None | None | None | N |
R/L | 0.2681 | likely_benign | 0.2893 | benign | 0.382 | Stabilizing | 0.911 | D | 0.563 | neutral | N | 0.449061247 | None | None | N |
R/M | 0.3289 | likely_benign | 0.3649 | ambiguous | -0.03 | Destabilizing | 0.998 | D | 0.605 | neutral | None | None | None | None | N |
R/N | 0.5701 | likely_pathogenic | 0.6036 | pathogenic | 0.097 | Stabilizing | 0.842 | D | 0.589 | neutral | None | None | None | None | N |
R/P | 0.9072 | likely_pathogenic | 0.9234 | pathogenic | 0.169 | Stabilizing | 0.986 | D | 0.617 | neutral | D | 0.601005943 | None | None | N |
R/Q | 0.0921 | likely_benign | 0.1027 | benign | -0.027 | Destabilizing | 0.949 | D | 0.649 | neutral | None | None | None | None | N |
R/S | 0.4419 | ambiguous | 0.4881 | ambiguous | -0.487 | Destabilizing | 0.285 | N | 0.431 | neutral | N | 0.445284459 | None | None | N |
R/T | 0.2427 | likely_benign | 0.2691 | benign | -0.211 | Destabilizing | 0.728 | D | 0.559 | neutral | None | None | None | None | N |
R/V | 0.3241 | likely_benign | 0.3548 | ambiguous | 0.169 | Stabilizing | 0.974 | D | 0.597 | neutral | None | None | None | None | N |
R/W | 0.1986 | likely_benign | 0.2148 | benign | -0.187 | Destabilizing | 0.998 | D | 0.645 | neutral | None | None | None | None | N |
R/Y | 0.3562 | ambiguous | 0.3785 | ambiguous | 0.174 | Stabilizing | 0.949 | D | 0.617 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.