Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5001 | 15226;15227;15228 | chr2:178734923;178734922;178734921 | chr2:179599650;179599649;179599648 |
N2AB | 4684 | 14275;14276;14277 | chr2:178734923;178734922;178734921 | chr2:179599650;179599649;179599648 |
N2A | 3757 | 11494;11495;11496 | chr2:178734923;178734922;178734921 | chr2:179599650;179599649;179599648 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | None | None | 0.999 | N | 0.801 | 0.386 | 0.567678221081 | gnomAD-4.0.0 | 4.78956E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.60072E-06 | 0 | 0 |
L/V | rs774593495 | -1.294 | 0.992 | D | 0.701 | 0.54 | 0.68230992181 | gnomAD-2.1.1 | 4.11E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.15E-06 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.9408 | likely_pathogenic | 0.9521 | pathogenic | -2.578 | Highly Destabilizing | 0.997 | D | 0.767 | deleterious | None | None | None | None | N |
L/C | 0.9186 | likely_pathogenic | 0.9332 | pathogenic | -1.754 | Destabilizing | 1.0 | D | 0.777 | deleterious | None | None | None | None | N |
L/D | 0.9989 | likely_pathogenic | 0.9988 | pathogenic | -3.281 | Highly Destabilizing | 1.0 | D | 0.843 | deleterious | None | None | None | None | N |
L/E | 0.9916 | likely_pathogenic | 0.9921 | pathogenic | -3.004 | Highly Destabilizing | 1.0 | D | 0.845 | deleterious | None | None | None | None | N |
L/F | 0.1578 | likely_benign | 0.237 | benign | -1.693 | Destabilizing | 0.999 | D | 0.801 | deleterious | N | 0.508756336 | None | None | N |
L/G | 0.9855 | likely_pathogenic | 0.9868 | pathogenic | -3.114 | Highly Destabilizing | 1.0 | D | 0.839 | deleterious | None | None | None | None | N |
L/H | 0.9457 | likely_pathogenic | 0.955 | pathogenic | -2.644 | Highly Destabilizing | 1.0 | D | 0.823 | deleterious | D | 0.815585471 | None | None | N |
L/I | 0.1599 | likely_benign | 0.1913 | benign | -0.98 | Destabilizing | 0.992 | D | 0.691 | prob.neutral | D | 0.589167828 | None | None | N |
L/K | 0.9832 | likely_pathogenic | 0.984 | pathogenic | -2.024 | Highly Destabilizing | 1.0 | D | 0.853 | deleterious | None | None | None | None | N |
L/M | 0.2112 | likely_benign | 0.2582 | benign | -0.94 | Destabilizing | 0.985 | D | 0.632 | neutral | None | None | None | None | N |
L/N | 0.9917 | likely_pathogenic | 0.9926 | pathogenic | -2.583 | Highly Destabilizing | 1.0 | D | 0.839 | deleterious | None | None | None | None | N |
L/P | 0.9954 | likely_pathogenic | 0.9948 | pathogenic | -1.502 | Destabilizing | 1.0 | D | 0.837 | deleterious | D | 0.815585471 | None | None | N |
L/Q | 0.9449 | likely_pathogenic | 0.9528 | pathogenic | -2.36 | Highly Destabilizing | 1.0 | D | 0.829 | deleterious | None | None | None | None | N |
L/R | 0.9635 | likely_pathogenic | 0.9642 | pathogenic | -1.941 | Destabilizing | 0.999 | D | 0.841 | deleterious | D | 0.815585471 | None | None | N |
L/S | 0.9847 | likely_pathogenic | 0.9878 | pathogenic | -3.153 | Highly Destabilizing | 1.0 | D | 0.856 | deleterious | None | None | None | None | N |
L/T | 0.9653 | likely_pathogenic | 0.9737 | pathogenic | -2.724 | Highly Destabilizing | 1.0 | D | 0.827 | deleterious | None | None | None | None | N |
L/V | 0.2538 | likely_benign | 0.3087 | benign | -1.502 | Destabilizing | 0.992 | D | 0.701 | prob.neutral | D | 0.690848973 | None | None | N |
L/W | 0.7024 | likely_pathogenic | 0.772 | pathogenic | -2.07 | Highly Destabilizing | 1.0 | D | 0.789 | deleterious | None | None | None | None | N |
L/Y | 0.7302 | likely_pathogenic | 0.7906 | pathogenic | -1.786 | Destabilizing | 1.0 | D | 0.797 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.