Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5005 | 15238;15239;15240 | chr2:178734911;178734910;178734909 | chr2:179599638;179599637;179599636 |
N2AB | 4688 | 14287;14288;14289 | chr2:178734911;178734910;178734909 | chr2:179599638;179599637;179599636 |
N2A | 3761 | 11506;11507;11508 | chr2:178734911;178734910;178734909 | chr2:179599638;179599637;179599636 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/V | rs1449279284 | -0.967 | 0.006 | N | 0.255 | 0.163 | 0.0846915920261 | gnomAD-2.1.1 | 4.07E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 9.04E-06 | 0 |
L/V | rs1449279284 | -0.967 | 0.006 | N | 0.255 | 0.163 | 0.0846915920261 | gnomAD-4.0.0 | 1.3694E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79972E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.8655 | likely_pathogenic | 0.8385 | pathogenic | -2.327 | Highly Destabilizing | 0.559 | D | 0.709 | prob.delet. | None | None | None | None | N |
L/C | 0.8942 | likely_pathogenic | 0.8691 | pathogenic | -1.565 | Destabilizing | 0.998 | D | 0.783 | deleterious | None | None | None | None | N |
L/D | 0.9985 | likely_pathogenic | 0.9984 | pathogenic | -1.9 | Destabilizing | 0.993 | D | 0.852 | deleterious | None | None | None | None | N |
L/E | 0.9858 | likely_pathogenic | 0.9864 | pathogenic | -1.674 | Destabilizing | 0.978 | D | 0.843 | deleterious | None | None | None | None | N |
L/F | 0.5434 | ambiguous | 0.5278 | ambiguous | -1.327 | Destabilizing | 0.956 | D | 0.765 | deleterious | None | None | None | None | N |
L/G | 0.9748 | likely_pathogenic | 0.9732 | pathogenic | -2.882 | Highly Destabilizing | 0.978 | D | 0.836 | deleterious | None | None | None | None | N |
L/H | 0.9761 | likely_pathogenic | 0.9753 | pathogenic | -2.217 | Highly Destabilizing | 0.998 | D | 0.834 | deleterious | None | None | None | None | N |
L/I | 0.1119 | likely_benign | 0.095 | benign | -0.736 | Destabilizing | 0.008 | N | 0.255 | neutral | None | None | None | None | N |
L/K | 0.9859 | likely_pathogenic | 0.9866 | pathogenic | -1.55 | Destabilizing | 0.978 | D | 0.813 | deleterious | None | None | None | None | N |
L/M | 0.2271 | likely_benign | 0.2251 | benign | -0.698 | Destabilizing | 0.942 | D | 0.739 | prob.delet. | N | 0.507032506 | None | None | N |
L/N | 0.9883 | likely_pathogenic | 0.9874 | pathogenic | -1.811 | Destabilizing | 0.993 | D | 0.839 | deleterious | None | None | None | None | N |
L/P | 0.987 | likely_pathogenic | 0.9863 | pathogenic | -1.245 | Destabilizing | 0.99 | D | 0.85 | deleterious | N | 0.470002358 | None | None | N |
L/Q | 0.9528 | likely_pathogenic | 0.955 | pathogenic | -1.647 | Destabilizing | 0.99 | D | 0.807 | deleterious | N | 0.512114899 | None | None | N |
L/R | 0.9696 | likely_pathogenic | 0.9704 | pathogenic | -1.365 | Destabilizing | 0.97 | D | 0.809 | deleterious | N | 0.512114899 | None | None | N |
L/S | 0.9721 | likely_pathogenic | 0.964 | pathogenic | -2.642 | Highly Destabilizing | 0.956 | D | 0.791 | deleterious | None | None | None | None | N |
L/T | 0.8754 | likely_pathogenic | 0.8556 | pathogenic | -2.257 | Highly Destabilizing | 0.86 | D | 0.765 | deleterious | None | None | None | None | N |
L/V | 0.1154 | likely_benign | 0.1029 | benign | -1.245 | Destabilizing | 0.006 | N | 0.255 | neutral | N | 0.303510907 | None | None | N |
L/W | 0.9134 | likely_pathogenic | 0.9147 | pathogenic | -1.609 | Destabilizing | 0.998 | D | 0.807 | deleterious | None | None | None | None | N |
L/Y | 0.9364 | likely_pathogenic | 0.9342 | pathogenic | -1.325 | Destabilizing | 0.978 | D | 0.803 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.