Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5256 | 15991;15992;15993 | chr2:178733623;178733622;178733621 | chr2:179598350;179598349;179598348 |
N2AB | 4939 | 15040;15041;15042 | chr2:178733623;178733622;178733621 | chr2:179598350;179598349;179598348 |
N2A | 4012 | 12259;12260;12261 | chr2:178733623;178733622;178733621 | chr2:179598350;179598349;179598348 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/T | rs773177460 | -0.672 | None | N | 0.111 | 0.109 | 0.374970422459 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 4.67E-05 | 0 | 0 |
I/T | rs773177460 | -0.672 | None | N | 0.111 | 0.109 | 0.374970422459 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 9.41E-05 | 0 | 0 | 0 | 0 |
I/T | rs773177460 | -0.672 | None | N | 0.111 | 0.109 | 0.374970422459 | gnomAD-4.0.0 | 2.48319E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 1.56348E-05 | 0 | 1.69832E-06 | 0 | 1.60514E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.0973 | likely_benign | 0.1155 | benign | -1.257 | Destabilizing | None | N | 0.112 | neutral | None | None | None | None | I |
I/C | 0.4227 | ambiguous | 0.4731 | ambiguous | -0.842 | Destabilizing | 0.54 | D | 0.358 | neutral | None | None | None | None | I |
I/D | 0.31 | likely_benign | 0.3773 | ambiguous | -0.627 | Destabilizing | 0.142 | N | 0.455 | neutral | None | None | None | None | I |
I/E | 0.2358 | likely_benign | 0.273 | benign | -0.65 | Destabilizing | 0.064 | N | 0.402 | neutral | None | None | None | None | I |
I/F | 0.0902 | likely_benign | 0.1005 | benign | -0.828 | Destabilizing | None | N | 0.107 | neutral | None | None | None | None | I |
I/G | 0.2965 | likely_benign | 0.3562 | ambiguous | -1.541 | Destabilizing | 0.033 | N | 0.384 | neutral | None | None | None | None | I |
I/H | 0.1757 | likely_benign | 0.1952 | benign | -0.703 | Destabilizing | 0.781 | D | 0.433 | neutral | None | None | None | None | I |
I/K | 0.1277 | likely_benign | 0.1417 | benign | -0.884 | Destabilizing | 0.049 | N | 0.394 | neutral | N | 0.489306263 | None | None | I |
I/L | 0.0747 | likely_benign | 0.0808 | benign | -0.576 | Destabilizing | 0.002 | N | 0.169 | neutral | N | 0.492490801 | None | None | I |
I/M | 0.0699 | likely_benign | 0.0745 | benign | -0.531 | Destabilizing | 0.005 | N | 0.169 | neutral | N | 0.512590657 | None | None | I |
I/N | 0.1085 | likely_benign | 0.1211 | benign | -0.684 | Destabilizing | 0.142 | N | 0.451 | neutral | None | None | None | None | I |
I/P | 0.6227 | likely_pathogenic | 0.7522 | pathogenic | -0.77 | Destabilizing | 0.251 | N | 0.492 | neutral | None | None | None | None | I |
I/Q | 0.1513 | likely_benign | 0.1711 | benign | -0.865 | Destabilizing | 0.251 | N | 0.509 | neutral | None | None | None | None | I |
I/R | 0.0896 | likely_benign | 0.0996 | benign | -0.291 | Destabilizing | 0.111 | N | 0.491 | neutral | N | 0.487512472 | None | None | I |
I/S | 0.0991 | likely_benign | 0.1125 | benign | -1.259 | Destabilizing | 0.003 | N | 0.151 | neutral | None | None | None | None | I |
I/T | 0.0623 | likely_benign | 0.0671 | benign | -1.166 | Destabilizing | None | N | 0.111 | neutral | N | 0.399463836 | None | None | I |
I/V | 0.0648 | likely_benign | 0.0731 | benign | -0.77 | Destabilizing | 0.005 | N | 0.182 | neutral | N | 0.484289497 | None | None | I |
I/W | 0.4298 | ambiguous | 0.472 | ambiguous | -0.867 | Destabilizing | 0.931 | D | 0.425 | neutral | None | None | None | None | I |
I/Y | 0.2616 | likely_benign | 0.2827 | benign | -0.652 | Destabilizing | 0.076 | N | 0.383 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.