Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5300 | 16123;16124;16125 | chr2:178733395;178733394;178733393 | chr2:179598122;179598121;179598120 |
N2AB | 4983 | 15172;15173;15174 | chr2:178733395;178733394;178733393 | chr2:179598122;179598121;179598120 |
N2A | 4056 | 12391;12392;12393 | chr2:178733395;178733394;178733393 | chr2:179598122;179598121;179598120 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/H | rs1248409979 | None | 1.0 | N | 0.549 | 0.429 | 0.598413393357 | gnomAD-4.0.0 | 1.59127E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43279E-05 | 0 |
P/S | rs1436998315 | -0.65 | 0.925 | N | 0.376 | 0.274 | 0.306053231325 | gnomAD-4.0.0 | 6.8421E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.65662E-05 |
P/T | None | None | 0.961 | N | 0.403 | 0.288 | 0.483082108137 | gnomAD-4.0.0 | 1.36842E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79896E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.0909 | likely_benign | 0.0882 | benign | -0.688 | Destabilizing | 0.248 | N | 0.209 | neutral | N | 0.510289035 | None | None | N |
P/C | 0.5572 | ambiguous | 0.5416 | ambiguous | -0.647 | Destabilizing | 1.0 | D | 0.613 | neutral | None | None | None | None | N |
P/D | 0.5384 | ambiguous | 0.5154 | ambiguous | -0.424 | Destabilizing | 0.942 | D | 0.373 | neutral | None | None | None | None | N |
P/E | 0.2564 | likely_benign | 0.2377 | benign | -0.476 | Destabilizing | 0.155 | N | 0.186 | neutral | None | None | None | None | N |
P/F | 0.4579 | ambiguous | 0.4544 | ambiguous | -0.627 | Destabilizing | 0.999 | D | 0.578 | neutral | None | None | None | None | N |
P/G | 0.3999 | ambiguous | 0.4075 | ambiguous | -0.887 | Destabilizing | 0.97 | D | 0.435 | neutral | None | None | None | None | N |
P/H | 0.2178 | likely_benign | 0.2185 | benign | -0.266 | Destabilizing | 1.0 | D | 0.549 | neutral | N | 0.509599753 | None | None | N |
P/I | 0.2428 | likely_benign | 0.2287 | benign | -0.28 | Destabilizing | 0.996 | D | 0.571 | neutral | None | None | None | None | N |
P/K | 0.3023 | likely_benign | 0.2872 | benign | -0.601 | Destabilizing | 0.97 | D | 0.357 | neutral | None | None | None | None | N |
P/L | 0.1007 | likely_benign | 0.1 | benign | -0.28 | Destabilizing | 0.961 | D | 0.467 | neutral | N | 0.49240079 | None | None | N |
P/M | 0.2591 | likely_benign | 0.2514 | benign | -0.462 | Destabilizing | 1.0 | D | 0.558 | neutral | None | None | None | None | N |
P/N | 0.385 | ambiguous | 0.3715 | ambiguous | -0.419 | Destabilizing | 0.996 | D | 0.493 | neutral | None | None | None | None | N |
P/Q | 0.1392 | likely_benign | 0.1363 | benign | -0.587 | Destabilizing | 0.991 | D | 0.415 | neutral | None | None | None | None | N |
P/R | 0.2137 | likely_benign | 0.2088 | benign | -0.099 | Destabilizing | 0.989 | D | 0.487 | neutral | N | 0.509461795 | None | None | N |
P/S | 0.1591 | likely_benign | 0.1579 | benign | -0.827 | Destabilizing | 0.925 | D | 0.376 | neutral | N | 0.507929336 | None | None | N |
P/T | 0.1279 | likely_benign | 0.1242 | benign | -0.771 | Destabilizing | 0.961 | D | 0.403 | neutral | N | 0.512328239 | None | None | N |
P/V | 0.1782 | likely_benign | 0.1717 | benign | -0.382 | Destabilizing | 0.97 | D | 0.457 | neutral | None | None | None | None | N |
P/W | 0.6505 | likely_pathogenic | 0.6566 | pathogenic | -0.744 | Destabilizing | 1.0 | D | 0.658 | neutral | None | None | None | None | N |
P/Y | 0.441 | ambiguous | 0.4363 | ambiguous | -0.45 | Destabilizing | 0.999 | D | 0.583 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.