Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5370 | 16333;16334;16335 | chr2:178733068;178733067;178733066 | chr2:179597795;179597794;179597793 |
N2AB | 5053 | 15382;15383;15384 | chr2:178733068;178733067;178733066 | chr2:179597795;179597794;179597793 |
N2A | 4126 | 12601;12602;12603 | chr2:178733068;178733067;178733066 | chr2:179597795;179597794;179597793 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/F | rs1560821296 | None | 0.003 | N | 0.211 | 0.172 | 0.457106177737 | gnomAD-4.0.0 | 1.37176E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.80253E-06 | 0 | 0 |
V/I | None | None | 0.001 | N | 0.127 | 0.112 | 0.1749357433 | gnomAD-4.0.0 | 2.05765E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.80253E-06 | 1.16539E-05 | 0 |
V/L | None | None | 0.001 | N | 0.097 | 0.112 | 0.128392430309 | gnomAD-4.0.0 | 6.85882E-07 | None | None | None | None | I | None | 0 | 0 | None | 0 | 2.52934E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.135 | likely_benign | 0.1367 | benign | -0.829 | Destabilizing | 0.165 | N | 0.351 | neutral | N | 0.435929202 | None | None | I |
V/C | 0.6937 | likely_pathogenic | 0.693 | pathogenic | -0.662 | Destabilizing | 0.981 | D | 0.285 | neutral | None | None | None | None | I |
V/D | 0.3329 | likely_benign | 0.3563 | ambiguous | -0.512 | Destabilizing | 0.912 | D | 0.363 | neutral | N | 0.465292104 | None | None | I |
V/E | 0.2127 | likely_benign | 0.2235 | benign | -0.611 | Destabilizing | 0.818 | D | 0.353 | neutral | None | None | None | None | I |
V/F | 0.1446 | likely_benign | 0.1464 | benign | -0.908 | Destabilizing | 0.003 | N | 0.211 | neutral | N | 0.457479767 | None | None | I |
V/G | 0.1603 | likely_benign | 0.1678 | benign | -1.009 | Destabilizing | 0.773 | D | 0.357 | neutral | N | 0.472710413 | None | None | I |
V/H | 0.503 | ambiguous | 0.5193 | ambiguous | -0.499 | Destabilizing | 0.981 | D | 0.343 | neutral | None | None | None | None | I |
V/I | 0.0722 | likely_benign | 0.072 | benign | -0.489 | Destabilizing | 0.001 | N | 0.127 | neutral | N | 0.445666193 | None | None | I |
V/K | 0.2319 | likely_benign | 0.243 | benign | -0.663 | Destabilizing | 0.818 | D | 0.349 | neutral | None | None | None | None | I |
V/L | 0.1272 | likely_benign | 0.1241 | benign | -0.489 | Destabilizing | 0.001 | N | 0.097 | neutral | N | 0.457632626 | None | None | I |
V/M | 0.115 | likely_benign | 0.1143 | benign | -0.397 | Destabilizing | 0.69 | D | 0.285 | neutral | None | None | None | None | I |
V/N | 0.2475 | likely_benign | 0.2586 | benign | -0.352 | Destabilizing | 0.932 | D | 0.349 | neutral | None | None | None | None | I |
V/P | 0.3404 | ambiguous | 0.3671 | ambiguous | -0.566 | Destabilizing | 0.932 | D | 0.339 | neutral | None | None | None | None | I |
V/Q | 0.2317 | likely_benign | 0.2359 | benign | -0.623 | Destabilizing | 0.932 | D | 0.333 | neutral | None | None | None | None | I |
V/R | 0.2002 | likely_benign | 0.2074 | benign | -0.075 | Destabilizing | 0.818 | D | 0.349 | neutral | None | None | None | None | I |
V/S | 0.1802 | likely_benign | 0.1863 | benign | -0.769 | Destabilizing | 0.818 | D | 0.353 | neutral | None | None | None | None | I |
V/T | 0.1813 | likely_benign | 0.1843 | benign | -0.768 | Destabilizing | 0.388 | N | 0.293 | neutral | None | None | None | None | I |
V/W | 0.6561 | likely_pathogenic | 0.6753 | pathogenic | -0.968 | Destabilizing | 0.981 | D | 0.384 | neutral | None | None | None | None | I |
V/Y | 0.4515 | ambiguous | 0.461 | ambiguous | -0.689 | Destabilizing | 0.527 | D | 0.302 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.