Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5525 | 16798;16799;16800 | chr2:178732488;178732487;178732486 | chr2:179597215;179597214;179597213 |
N2AB | 5208 | 15847;15848;15849 | chr2:178732488;178732487;178732486 | chr2:179597215;179597214;179597213 |
N2A | 4281 | 13066;13067;13068 | chr2:178732488;178732487;178732486 | chr2:179597215;179597214;179597213 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/I | None | None | 0.667 | N | 0.699 | 0.349 | 0.645206814577 | gnomAD-4.0.0 | 1.36918E-06 | None | None | None | None | N | None | 5.98516E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
S/R | None | None | 0.497 | D | 0.609 | 0.208 | 0.478680857624 | gnomAD-4.0.0 | 1.59319E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86143E-06 | 0 | 0 |
S/T | rs727503649 | None | 0.22 | N | 0.596 | 0.089 | None | gnomAD-4.0.0 | 6.84592E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.65788E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/A | 0.0997 | likely_benign | 0.1048 | benign | -0.732 | Destabilizing | 0.072 | N | 0.565 | neutral | None | None | None | None | N |
S/C | 0.145 | likely_benign | 0.1585 | benign | -0.629 | Destabilizing | 0.958 | D | 0.631 | neutral | N | 0.505357655 | None | None | N |
S/D | 0.39 | ambiguous | 0.4364 | ambiguous | -0.571 | Destabilizing | 0.157 | N | 0.574 | neutral | None | None | None | None | N |
S/E | 0.4832 | ambiguous | 0.5204 | ambiguous | -0.598 | Destabilizing | 0.272 | N | 0.597 | neutral | None | None | None | None | N |
S/F | 0.1764 | likely_benign | 0.1807 | benign | -1.091 | Destabilizing | 0.89 | D | 0.702 | prob.neutral | None | None | None | None | N |
S/G | 0.1253 | likely_benign | 0.1367 | benign | -0.937 | Destabilizing | 0.001 | N | 0.223 | neutral | N | 0.493240881 | None | None | N |
S/H | 0.3242 | likely_benign | 0.3452 | ambiguous | -1.479 | Destabilizing | 0.832 | D | 0.623 | neutral | None | None | None | None | N |
S/I | 0.1854 | likely_benign | 0.2056 | benign | -0.299 | Destabilizing | 0.667 | D | 0.699 | prob.neutral | N | 0.48789851 | None | None | N |
S/K | 0.6693 | likely_pathogenic | 0.7217 | pathogenic | -0.76 | Destabilizing | 0.157 | N | 0.611 | neutral | None | None | None | None | N |
S/L | 0.115 | likely_benign | 0.1216 | benign | -0.299 | Destabilizing | 0.567 | D | 0.627 | neutral | None | None | None | None | N |
S/M | 0.2008 | likely_benign | 0.2149 | benign | 0.087 | Stabilizing | 0.968 | D | 0.62 | neutral | None | None | None | None | N |
S/N | 0.1249 | likely_benign | 0.142 | benign | -0.72 | Destabilizing | 0.001 | N | 0.314 | neutral | N | 0.497506842 | None | None | N |
S/P | 0.9456 | likely_pathogenic | 0.9596 | pathogenic | -0.412 | Destabilizing | 0.726 | D | 0.614 | neutral | None | None | None | None | N |
S/Q | 0.4603 | ambiguous | 0.4904 | ambiguous | -0.98 | Destabilizing | 0.567 | D | 0.617 | neutral | None | None | None | None | N |
S/R | 0.5258 | ambiguous | 0.5729 | pathogenic | -0.57 | Destabilizing | 0.497 | N | 0.609 | neutral | D | 0.529403163 | None | None | N |
S/T | 0.0785 | likely_benign | 0.0809 | benign | -0.74 | Destabilizing | 0.22 | N | 0.596 | neutral | N | 0.469525354 | None | None | N |
S/V | 0.2041 | likely_benign | 0.2206 | benign | -0.412 | Destabilizing | 0.726 | D | 0.65 | neutral | None | None | None | None | N |
S/W | 0.3166 | likely_benign | 0.3248 | benign | -1.041 | Destabilizing | 0.968 | D | 0.749 | deleterious | None | None | None | None | N |
S/Y | 0.1962 | likely_benign | 0.2048 | benign | -0.772 | Destabilizing | 0.89 | D | 0.707 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.