Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5775 | 17548;17549;17550 | chr2:178731443;178731442;178731441 | chr2:179596170;179596169;179596168 |
N2AB | 5458 | 16597;16598;16599 | chr2:178731443;178731442;178731441 | chr2:179596170;179596169;179596168 |
N2A | 4531 | 13816;13817;13818 | chr2:178731443;178731442;178731441 | chr2:179596170;179596169;179596168 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/S | rs1347227022 | -0.294 | 0.549 | N | 0.373 | 0.144 | 0.126345400529 | gnomAD-2.1.1 | 3.18E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 2.87687E-04 | 0 | 0 |
N/S | rs1347227022 | -0.294 | 0.549 | N | 0.373 | 0.144 | 0.126345400529 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 9.42E-05 | 0 | 0 | 0 | 0 |
N/S | rs1347227022 | -0.294 | 0.549 | N | 0.373 | 0.144 | 0.126345400529 | gnomAD-4.0.0 | 5.1246E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 6.27569E-05 | 0 | 0 | 0 | 0 |
N/T | None | None | 0.712 | N | 0.388 | 0.149 | 0.186928172975 | gnomAD-4.0.0 | 4.77395E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.71647E-06 | 1.43279E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.1877 | likely_benign | 0.1993 | benign | -0.536 | Destabilizing | 0.617 | D | 0.377 | neutral | None | None | None | None | N |
N/C | 0.2533 | likely_benign | 0.2635 | benign | 0.385 | Stabilizing | 0.992 | D | 0.556 | neutral | None | None | None | None | N |
N/D | 0.1241 | likely_benign | 0.122 | benign | -0.337 | Destabilizing | 0.549 | D | 0.383 | neutral | N | 0.491955843 | None | None | N |
N/E | 0.351 | ambiguous | 0.3567 | ambiguous | -0.336 | Destabilizing | 0.447 | N | 0.341 | neutral | None | None | None | None | N |
N/F | 0.4263 | ambiguous | 0.4605 | ambiguous | -0.763 | Destabilizing | 0.85 | D | 0.505 | neutral | None | None | None | None | N |
N/G | 0.2361 | likely_benign | 0.2548 | benign | -0.771 | Destabilizing | 0.005 | N | 0.152 | neutral | None | None | None | None | N |
N/H | 0.0845 | likely_benign | 0.0882 | benign | -0.858 | Destabilizing | 0.004 | N | 0.221 | neutral | N | 0.45037858 | None | None | N |
N/I | 0.2167 | likely_benign | 0.2331 | benign | 0.013 | Stabilizing | 0.896 | D | 0.5 | neutral | N | 0.495612224 | None | None | N |
N/K | 0.2172 | likely_benign | 0.2328 | benign | -0.045 | Destabilizing | 0.549 | D | 0.38 | neutral | N | 0.455666969 | None | None | N |
N/L | 0.2309 | likely_benign | 0.2498 | benign | 0.013 | Stabilizing | 0.85 | D | 0.484 | neutral | None | None | None | None | N |
N/M | 0.2969 | likely_benign | 0.3291 | benign | 0.624 | Stabilizing | 0.992 | D | 0.448 | neutral | None | None | None | None | N |
N/P | 0.7584 | likely_pathogenic | 0.7849 | pathogenic | -0.142 | Destabilizing | 0.012 | N | 0.328 | neutral | None | None | None | None | N |
N/Q | 0.2663 | likely_benign | 0.2826 | benign | -0.588 | Destabilizing | 0.85 | D | 0.405 | neutral | None | None | None | None | N |
N/R | 0.2257 | likely_benign | 0.2336 | benign | -0.005 | Destabilizing | 0.85 | D | 0.39 | neutral | None | None | None | None | N |
N/S | 0.0793 | likely_benign | 0.0837 | benign | -0.345 | Destabilizing | 0.549 | D | 0.373 | neutral | N | 0.484144437 | None | None | N |
N/T | 0.1113 | likely_benign | 0.1181 | benign | -0.185 | Destabilizing | 0.712 | D | 0.388 | neutral | N | 0.513947269 | None | None | N |
N/V | 0.2251 | likely_benign | 0.241 | benign | -0.142 | Destabilizing | 0.92 | D | 0.498 | neutral | None | None | None | None | N |
N/W | 0.7243 | likely_pathogenic | 0.747 | pathogenic | -0.668 | Destabilizing | 0.992 | D | 0.595 | neutral | None | None | None | None | N |
N/Y | 0.1511 | likely_benign | 0.1563 | benign | -0.423 | Destabilizing | 0.681 | D | 0.459 | neutral | N | 0.503423631 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.