Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5812 | 17659;17660;17661 | chr2:178731332;178731331;178731330 | chr2:179596059;179596058;179596057 |
N2AB | 5495 | 16708;16709;16710 | chr2:178731332;178731331;178731330 | chr2:179596059;179596058;179596057 |
N2A | 4568 | 13927;13928;13929 | chr2:178731332;178731331;178731330 | chr2:179596059;179596058;179596057 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/T | rs1461562735 | 0.03 | 0.064 | N | 0.273 | 0.243 | 0.364730456448 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
R/T | rs1461562735 | 0.03 | 0.064 | N | 0.273 | 0.243 | 0.364730456448 | gnomAD-4.0.0 | 2.73691E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 4.63768E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.4729 | ambiguous | 0.3975 | ambiguous | -0.585 | Destabilizing | 0.38 | N | 0.333 | neutral | None | None | None | None | N |
R/C | 0.2731 | likely_benign | 0.2471 | benign | -0.587 | Destabilizing | 0.998 | D | 0.427 | neutral | None | None | None | None | N |
R/D | 0.6802 | likely_pathogenic | 0.5975 | pathogenic | -0.038 | Destabilizing | 0.584 | D | 0.47 | neutral | None | None | None | None | N |
R/E | 0.3566 | ambiguous | 0.3004 | benign | 0.117 | Stabilizing | 0.037 | N | 0.231 | neutral | None | None | None | None | N |
R/F | 0.5708 | likely_pathogenic | 0.4993 | ambiguous | -0.245 | Destabilizing | 0.993 | D | 0.441 | neutral | None | None | None | None | N |
R/G | 0.3387 | likely_benign | 0.2912 | benign | -0.923 | Destabilizing | 0.679 | D | 0.44 | neutral | N | 0.488997693 | None | None | N |
R/H | 0.1112 | likely_benign | 0.103 | benign | -1.282 | Destabilizing | 0.993 | D | 0.528 | neutral | None | None | None | None | N |
R/I | 0.2811 | likely_benign | 0.2293 | benign | 0.329 | Stabilizing | 0.947 | D | 0.503 | neutral | N | 0.504006074 | None | None | N |
R/K | 0.101 | likely_benign | 0.0946 | benign | -0.587 | Destabilizing | 0.028 | N | 0.227 | neutral | N | 0.445899133 | None | None | N |
R/L | 0.2859 | likely_benign | 0.2421 | benign | 0.329 | Stabilizing | 0.737 | D | 0.468 | neutral | None | None | None | None | N |
R/M | 0.2995 | likely_benign | 0.2476 | benign | -0.207 | Destabilizing | 0.993 | D | 0.478 | neutral | None | None | None | None | N |
R/N | 0.536 | ambiguous | 0.4413 | ambiguous | -0.285 | Destabilizing | 0.872 | D | 0.484 | neutral | None | None | None | None | N |
R/P | 0.8569 | likely_pathogenic | 0.831 | pathogenic | 0.046 | Stabilizing | 0.932 | D | 0.523 | neutral | None | None | None | None | N |
R/Q | 0.1124 | likely_benign | 0.105 | benign | -0.296 | Destabilizing | 0.872 | D | 0.5 | neutral | None | None | None | None | N |
R/S | 0.447 | ambiguous | 0.3685 | ambiguous | -0.924 | Destabilizing | 0.077 | N | 0.307 | neutral | N | 0.449054081 | None | None | N |
R/T | 0.2158 | likely_benign | 0.1669 | benign | -0.571 | Destabilizing | 0.064 | N | 0.273 | neutral | N | 0.440221167 | None | None | N |
R/V | 0.3603 | ambiguous | 0.3047 | benign | 0.046 | Stabilizing | 0.872 | D | 0.511 | neutral | None | None | None | None | N |
R/W | 0.2338 | likely_benign | 0.2151 | benign | 0.031 | Stabilizing | 0.998 | D | 0.45 | neutral | None | None | None | None | N |
R/Y | 0.3967 | ambiguous | 0.3369 | benign | 0.311 | Stabilizing | 0.993 | D | 0.463 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.