Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5873 | 17842;17843;17844 | chr2:178731048;178731047;178731046 | chr2:179595775;179595774;179595773 |
N2AB | 5556 | 16891;16892;16893 | chr2:178731048;178731047;178731046 | chr2:179595775;179595774;179595773 |
N2A | 4629 | 14110;14111;14112 | chr2:178731048;178731047;178731046 | chr2:179595775;179595774;179595773 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | rs2080389838 | None | 0.047 | N | 0.285 | 0.158 | 0.464098490096 | gnomAD-4.0.0 | 1.20034E-06 | None | None | None | None | N | None | 6.33553E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/F | None | None | 0.002 | N | 0.393 | 0.24 | 0.608446283964 | gnomAD-4.0.0 | 6.84245E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.15931E-05 | 0 |
V/I | None | None | 0.002 | N | 0.251 | 0.074 | 0.333651784274 | gnomAD-4.0.0 | 1.36849E-06 | None | None | None | None | N | None | 2.98972E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99509E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1806 | likely_benign | 0.1834 | benign | -0.511 | Destabilizing | 0.047 | N | 0.285 | neutral | N | 0.504640792 | None | None | N |
V/C | 0.7158 | likely_pathogenic | 0.719 | pathogenic | -0.672 | Destabilizing | 0.983 | D | 0.502 | neutral | None | None | None | None | N |
V/D | 0.3373 | likely_benign | 0.3741 | ambiguous | 0.096 | Stabilizing | 0.351 | N | 0.569 | neutral | N | 0.495079946 | None | None | N |
V/E | 0.2931 | likely_benign | 0.3061 | benign | 0.008 | Stabilizing | 0.418 | N | 0.554 | neutral | None | None | None | None | N |
V/F | 0.1293 | likely_benign | 0.1284 | benign | -0.584 | Destabilizing | 0.002 | N | 0.393 | neutral | N | 0.443728406 | None | None | N |
V/G | 0.2451 | likely_benign | 0.2702 | benign | -0.677 | Destabilizing | 0.002 | N | 0.471 | neutral | N | 0.49838961 | None | None | N |
V/H | 0.4825 | ambiguous | 0.4943 | ambiguous | -0.232 | Destabilizing | 0.983 | D | 0.561 | neutral | None | None | None | None | N |
V/I | 0.0765 | likely_benign | 0.0728 | benign | -0.216 | Destabilizing | 0.002 | N | 0.251 | neutral | N | 0.459255219 | None | None | N |
V/K | 0.3214 | likely_benign | 0.3245 | benign | -0.38 | Destabilizing | 0.418 | N | 0.559 | neutral | None | None | None | None | N |
V/L | 0.1912 | likely_benign | 0.1695 | benign | -0.216 | Destabilizing | 0.037 | N | 0.349 | neutral | N | 0.470664291 | None | None | N |
V/M | 0.1209 | likely_benign | 0.1162 | benign | -0.305 | Destabilizing | 0.716 | D | 0.512 | neutral | None | None | None | None | N |
V/N | 0.253 | likely_benign | 0.2617 | benign | -0.176 | Destabilizing | 0.418 | N | 0.567 | neutral | None | None | None | None | N |
V/P | 0.8113 | likely_pathogenic | 0.7876 | pathogenic | -0.278 | Destabilizing | 0.836 | D | 0.56 | neutral | None | None | None | None | N |
V/Q | 0.2851 | likely_benign | 0.293 | benign | -0.364 | Destabilizing | 0.836 | D | 0.561 | neutral | None | None | None | None | N |
V/R | 0.2732 | likely_benign | 0.2841 | benign | 0.051 | Stabilizing | 0.836 | D | 0.573 | neutral | None | None | None | None | N |
V/S | 0.2043 | likely_benign | 0.2149 | benign | -0.635 | Destabilizing | 0.012 | N | 0.435 | neutral | None | None | None | None | N |
V/T | 0.1738 | likely_benign | 0.1783 | benign | -0.613 | Destabilizing | 0.01 | N | 0.247 | neutral | None | None | None | None | N |
V/W | 0.7671 | likely_pathogenic | 0.7437 | pathogenic | -0.676 | Destabilizing | 0.983 | D | 0.563 | neutral | None | None | None | None | N |
V/Y | 0.4552 | ambiguous | 0.4656 | ambiguous | -0.364 | Destabilizing | 0.557 | D | 0.523 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.