Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6207 | 18844;18845;18846 | chr2:178729537;178729536;178729535 | chr2:179594264;179594263;179594262 |
N2AB | 5890 | 17893;17894;17895 | chr2:178729537;178729536;178729535 | chr2:179594264;179594263;179594262 |
N2A | 4963 | 15112;15113;15114 | chr2:178729537;178729536;178729535 | chr2:179594264;179594263;179594262 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | rs755803926 | -0.766 | 0.039 | N | 0.405 | 0.215 | 0.112648838833 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.28E-05 | None | 0 | 0 | 0 |
P/A | rs755803926 | -0.766 | 0.039 | N | 0.405 | 0.215 | 0.112648838833 | gnomAD-4.0.0 | 1.5931E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43345E-05 | 0 |
P/S | None | None | 0.957 | N | 0.708 | 0.312 | 0.126345400529 | gnomAD-4.0.0 | 3.18619E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.72439E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.076 | likely_benign | 0.0847 | benign | -0.519 | Destabilizing | 0.039 | N | 0.405 | neutral | N | 0.502711555 | None | None | N |
P/C | 0.606 | likely_pathogenic | 0.6787 | pathogenic | -0.556 | Destabilizing | 0.998 | D | 0.763 | deleterious | None | None | None | None | N |
P/D | 0.2801 | likely_benign | 0.3024 | benign | -0.496 | Destabilizing | 0.992 | D | 0.786 | deleterious | None | None | None | None | N |
P/E | 0.2195 | likely_benign | 0.2502 | benign | -0.602 | Destabilizing | 0.983 | D | 0.78 | deleterious | None | None | None | None | N |
P/F | 0.5166 | ambiguous | 0.5992 | pathogenic | -0.709 | Destabilizing | 0.998 | D | 0.787 | deleterious | None | None | None | None | N |
P/G | 0.2811 | likely_benign | 0.3202 | benign | -0.665 | Destabilizing | 0.895 | D | 0.702 | prob.neutral | None | None | None | None | N |
P/H | 0.2059 | likely_benign | 0.2394 | benign | -0.27 | Destabilizing | 0.999 | D | 0.738 | prob.delet. | N | 0.454793515 | None | None | N |
P/I | 0.3946 | ambiguous | 0.4702 | ambiguous | -0.279 | Destabilizing | 0.983 | D | 0.806 | deleterious | None | None | None | None | N |
P/K | 0.3382 | likely_benign | 0.3723 | ambiguous | -0.561 | Destabilizing | 0.983 | D | 0.787 | deleterious | None | None | None | None | N |
P/L | 0.1472 | likely_benign | 0.1732 | benign | -0.279 | Destabilizing | 0.957 | D | 0.769 | deleterious | N | 0.495342865 | None | None | N |
P/M | 0.3199 | likely_benign | 0.375 | ambiguous | -0.356 | Destabilizing | 0.999 | D | 0.739 | prob.delet. | None | None | None | None | N |
P/N | 0.2438 | likely_benign | 0.273 | benign | -0.249 | Destabilizing | 0.992 | D | 0.806 | deleterious | None | None | None | None | N |
P/Q | 0.1636 | likely_benign | 0.1919 | benign | -0.493 | Destabilizing | 0.992 | D | 0.807 | deleterious | None | None | None | None | N |
P/R | 0.2175 | likely_benign | 0.2502 | benign | -0.031 | Destabilizing | 0.978 | D | 0.804 | deleterious | N | 0.511235037 | None | None | N |
P/S | 0.1088 | likely_benign | 0.1229 | benign | -0.571 | Destabilizing | 0.957 | D | 0.708 | prob.delet. | N | 0.425480135 | None | None | N |
P/T | 0.1008 | likely_benign | 0.1218 | benign | -0.581 | Destabilizing | 0.978 | D | 0.719 | prob.delet. | N | 0.495822868 | None | None | N |
P/V | 0.2555 | likely_benign | 0.3039 | benign | -0.324 | Destabilizing | 0.968 | D | 0.72 | prob.delet. | None | None | None | None | N |
P/W | 0.6587 | likely_pathogenic | 0.7315 | pathogenic | -0.811 | Destabilizing | 0.999 | D | 0.775 | deleterious | None | None | None | None | N |
P/Y | 0.4448 | ambiguous | 0.5102 | ambiguous | -0.517 | Destabilizing | 0.999 | D | 0.784 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.