Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6218 | 18877;18878;18879 | chr2:178729504;178729503;178729502 | chr2:179594231;179594230;179594229 |
N2AB | 5901 | 17926;17927;17928 | chr2:178729504;178729503;178729502 | chr2:179594231;179594230;179594229 |
N2A | 4974 | 15145;15146;15147 | chr2:178729504;178729503;178729502 | chr2:179594231;179594230;179594229 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/R | rs727505193 | -2.071 | 0.999 | D | 0.907 | 0.876 | None | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | N | None | 1.65453E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
L/R | rs727505193 | -2.071 | 0.999 | D | 0.907 | 0.876 | None | gnomAD-3.1.2 | 4.6E-05 | None | None | None | None | N | None | 1.44802E-04 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
L/R | rs727505193 | -2.071 | 0.999 | D | 0.907 | 0.876 | None | gnomAD-4.0.0 | 1.11563E-05 | None | None | None | None | N | None | 2.1367E-04 | 1.66783E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.60123E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.7656 | likely_pathogenic | 0.7787 | pathogenic | -2.644 | Highly Destabilizing | 0.992 | D | 0.759 | deleterious | None | None | None | None | N |
L/C | 0.8753 | likely_pathogenic | 0.888 | pathogenic | -2.026 | Highly Destabilizing | 1.0 | D | 0.808 | deleterious | None | None | None | None | N |
L/D | 0.9968 | likely_pathogenic | 0.9958 | pathogenic | -3.432 | Highly Destabilizing | 0.999 | D | 0.911 | deleterious | None | None | None | None | N |
L/E | 0.9799 | likely_pathogenic | 0.9742 | pathogenic | -3.127 | Highly Destabilizing | 0.999 | D | 0.909 | deleterious | None | None | None | None | N |
L/F | 0.2047 | likely_benign | 0.215 | benign | -1.615 | Destabilizing | 0.154 | N | 0.331 | neutral | None | None | None | None | N |
L/G | 0.9594 | likely_pathogenic | 0.9564 | pathogenic | -3.232 | Highly Destabilizing | 0.999 | D | 0.908 | deleterious | None | None | None | None | N |
L/H | 0.9543 | likely_pathogenic | 0.943 | pathogenic | -2.831 | Highly Destabilizing | 1.0 | D | 0.908 | deleterious | None | None | None | None | N |
L/I | 0.1487 | likely_benign | 0.1549 | benign | -0.887 | Destabilizing | 0.983 | D | 0.613 | neutral | None | None | None | None | N |
L/K | 0.9749 | likely_pathogenic | 0.9657 | pathogenic | -2.179 | Highly Destabilizing | 0.999 | D | 0.907 | deleterious | None | None | None | None | N |
L/M | 0.13 | likely_benign | 0.1329 | benign | -1.002 | Destabilizing | 0.999 | D | 0.702 | prob.neutral | D | 0.551324541 | None | None | N |
L/N | 0.9849 | likely_pathogenic | 0.9815 | pathogenic | -2.804 | Highly Destabilizing | 0.999 | D | 0.916 | deleterious | None | None | None | None | N |
L/P | 0.9898 | likely_pathogenic | 0.9852 | pathogenic | -1.462 | Destabilizing | 0.999 | D | 0.915 | deleterious | D | 0.633792995 | None | None | N |
L/Q | 0.9304 | likely_pathogenic | 0.9088 | pathogenic | -2.515 | Highly Destabilizing | 0.999 | D | 0.917 | deleterious | D | 0.633792995 | None | None | N |
L/R | 0.9528 | likely_pathogenic | 0.9384 | pathogenic | -2.169 | Highly Destabilizing | 0.999 | D | 0.907 | deleterious | D | 0.633792995 | None | None | N |
L/S | 0.9614 | likely_pathogenic | 0.958 | pathogenic | -3.399 | Highly Destabilizing | 0.999 | D | 0.898 | deleterious | None | None | None | None | N |
L/T | 0.8581 | likely_pathogenic | 0.8532 | pathogenic | -2.928 | Highly Destabilizing | 0.999 | D | 0.823 | deleterious | None | None | None | None | N |
L/V | 0.1909 | likely_benign | 0.2022 | benign | -1.462 | Destabilizing | 0.978 | D | 0.643 | neutral | D | 0.569867353 | None | None | N |
L/W | 0.7282 | likely_pathogenic | 0.6729 | pathogenic | -2.006 | Highly Destabilizing | 1.0 | D | 0.903 | deleterious | None | None | None | None | N |
L/Y | 0.7864 | likely_pathogenic | 0.7795 | pathogenic | -1.74 | Destabilizing | 0.99 | D | 0.823 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.