Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6237 | 18934;18935;18936 | chr2:178729447;178729446;178729445 | chr2:179594174;179594173;179594172 |
N2AB | 5920 | 17983;17984;17985 | chr2:178729447;178729446;178729445 | chr2:179594174;179594173;179594172 |
N2A | 4993 | 15202;15203;15204 | chr2:178729447;178729446;178729445 | chr2:179594174;179594173;179594172 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | None | None | 0.005 | N | 0.301 | 0.201 | 0.480574121323 | gnomAD-4.0.0 | 1.59166E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 1.88239E-05 | 0 | 0 | 0 | 0 |
R/W | rs750368911 | -0.279 | 0.828 | N | 0.277 | 0.409 | 0.450733807028 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 2.67E-05 | 0 |
R/W | rs750368911 | -0.279 | 0.828 | N | 0.277 | 0.409 | 0.450733807028 | gnomAD-4.0.0 | 6.36663E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.1437E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3092 | likely_benign | 0.3369 | benign | 0.086 | Stabilizing | 0.003 | N | 0.249 | neutral | None | None | None | None | N |
R/C | 0.3156 | likely_benign | 0.3425 | ambiguous | -0.011 | Destabilizing | 0.628 | D | 0.279 | neutral | None | None | None | None | N |
R/D | 0.5467 | ambiguous | 0.5873 | pathogenic | -0.154 | Destabilizing | 0.031 | N | 0.288 | neutral | None | None | None | None | N |
R/E | 0.2682 | likely_benign | 0.2708 | benign | -0.095 | Destabilizing | 0.007 | N | 0.213 | neutral | None | None | None | None | N |
R/F | 0.5541 | ambiguous | 0.5875 | pathogenic | -0.122 | Destabilizing | 0.628 | D | 0.358 | neutral | None | None | None | None | N |
R/G | 0.2128 | likely_benign | 0.2127 | benign | -0.105 | Destabilizing | 0.005 | N | 0.301 | neutral | N | 0.487479183 | None | None | N |
R/H | 0.126 | likely_benign | 0.1385 | benign | -0.64 | Destabilizing | 0.356 | N | 0.223 | neutral | None | None | None | None | N |
R/I | 0.2343 | likely_benign | 0.2606 | benign | 0.553 | Stabilizing | 0.136 | N | 0.435 | neutral | None | None | None | None | N |
R/K | 0.0594 | likely_benign | 0.0596 | benign | 0.007 | Stabilizing | None | N | 0.2 | neutral | N | 0.389525775 | None | None | N |
R/L | 0.2392 | likely_benign | 0.2543 | benign | 0.553 | Stabilizing | 0.031 | N | 0.28 | neutral | None | None | None | None | N |
R/M | 0.213 | likely_benign | 0.2228 | benign | 0.114 | Stabilizing | 0.56 | D | 0.281 | neutral | N | 0.483516158 | None | None | N |
R/N | 0.3977 | ambiguous | 0.4572 | ambiguous | 0.238 | Stabilizing | 0.031 | N | 0.221 | neutral | None | None | None | None | N |
R/P | 0.8616 | likely_pathogenic | 0.8678 | pathogenic | 0.418 | Stabilizing | 0.136 | N | 0.365 | neutral | None | None | None | None | N |
R/Q | 0.0975 | likely_benign | 0.1018 | benign | 0.151 | Stabilizing | 0.016 | N | 0.303 | neutral | None | None | None | None | N |
R/S | 0.3526 | ambiguous | 0.3912 | ambiguous | -0.034 | Destabilizing | None | N | 0.164 | neutral | N | 0.473507021 | None | None | N |
R/T | 0.1654 | likely_benign | 0.1938 | benign | 0.152 | Stabilizing | 0.012 | N | 0.303 | neutral | N | 0.473317807 | None | None | N |
R/V | 0.2769 | likely_benign | 0.3085 | benign | 0.418 | Stabilizing | 0.031 | N | 0.318 | neutral | None | None | None | None | N |
R/W | 0.2347 | likely_benign | 0.2275 | benign | -0.213 | Destabilizing | 0.828 | D | 0.277 | neutral | N | 0.493974897 | None | None | N |
R/Y | 0.43 | ambiguous | 0.4609 | ambiguous | 0.195 | Stabilizing | 0.356 | N | 0.373 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.