Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6419 | 19480;19481;19482 | chr2:178728671;178728670;178728669 | chr2:179593398;179593397;179593396 |
N2AB | 6102 | 18529;18530;18531 | chr2:178728671;178728670;178728669 | chr2:179593398;179593397;179593396 |
N2A | 5175 | 15748;15749;15750 | chr2:178728671;178728670;178728669 | chr2:179593398;179593397;179593396 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | None | None | 0.002 | N | 0.222 | 0.1 | 0.277317399466 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 6.33473E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
L/R | None | None | 0.004 | N | 0.515 | 0.229 | 0.645662332294 | gnomAD-4.0.0 | 3.1847E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.71981E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.407 | ambiguous | 0.3651 | ambiguous | -2.411 | Highly Destabilizing | 0.129 | N | 0.481 | neutral | None | None | None | None | N |
L/C | 0.4746 | ambiguous | 0.4264 | ambiguous | -1.721 | Destabilizing | 0.983 | D | 0.541 | neutral | None | None | None | None | N |
L/D | 0.7604 | likely_pathogenic | 0.7023 | pathogenic | -2.393 | Highly Destabilizing | 0.716 | D | 0.605 | neutral | None | None | None | None | N |
L/E | 0.3237 | likely_benign | 0.2997 | benign | -2.257 | Highly Destabilizing | 0.418 | N | 0.585 | neutral | None | None | None | None | N |
L/F | 0.0704 | likely_benign | 0.0607 | benign | -1.517 | Destabilizing | 0.002 | N | 0.222 | neutral | N | 0.395023942 | None | None | N |
L/G | 0.6585 | likely_pathogenic | 0.6166 | pathogenic | -2.873 | Highly Destabilizing | 0.418 | N | 0.564 | neutral | None | None | None | None | N |
L/H | 0.1965 | likely_benign | 0.1593 | benign | -2.171 | Highly Destabilizing | 0.655 | D | 0.593 | neutral | N | 0.454441574 | None | None | N |
L/I | 0.1358 | likely_benign | 0.1161 | benign | -1.121 | Destabilizing | 0.213 | N | 0.437 | neutral | N | 0.455642889 | None | None | N |
L/K | 0.3505 | ambiguous | 0.304 | benign | -1.787 | Destabilizing | 0.264 | N | 0.524 | neutral | None | None | None | None | N |
L/M | 0.0938 | likely_benign | 0.0897 | benign | -1.024 | Destabilizing | 0.061 | N | 0.371 | neutral | None | None | None | None | N |
L/N | 0.4278 | ambiguous | 0.3805 | ambiguous | -1.883 | Destabilizing | 0.716 | D | 0.612 | neutral | None | None | None | None | N |
L/P | 0.9854 | likely_pathogenic | 0.9762 | pathogenic | -1.528 | Destabilizing | 0.794 | D | 0.597 | neutral | N | 0.498145276 | None | None | N |
L/Q | 0.1319 | likely_benign | 0.1211 | benign | -1.903 | Destabilizing | 0.716 | D | 0.575 | neutral | None | None | None | None | N |
L/R | 0.2552 | likely_benign | 0.2241 | benign | -1.319 | Destabilizing | 0.004 | N | 0.515 | neutral | N | 0.507061369 | None | None | N |
L/S | 0.3 | likely_benign | 0.2527 | benign | -2.585 | Highly Destabilizing | 0.027 | N | 0.533 | neutral | None | None | None | None | N |
L/T | 0.2621 | likely_benign | 0.2323 | benign | -2.321 | Highly Destabilizing | 0.01 | N | 0.449 | neutral | None | None | None | None | N |
L/V | 0.1269 | likely_benign | 0.1117 | benign | -1.528 | Destabilizing | 0.101 | N | 0.44 | neutral | N | 0.514699417 | None | None | N |
L/W | 0.1392 | likely_benign | 0.1149 | benign | -1.78 | Destabilizing | 0.951 | D | 0.556 | neutral | None | None | None | None | N |
L/Y | 0.1836 | likely_benign | 0.1569 | benign | -1.535 | Destabilizing | 0.002 | N | 0.442 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.