Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6426 | 19501;19502;19503 | chr2:178728650;178728649;178728648 | chr2:179593377;179593376;179593375 |
N2AB | 6109 | 18550;18551;18552 | chr2:178728650;178728649;178728648 | chr2:179593377;179593376;179593375 |
N2A | 5182 | 15769;15770;15771 | chr2:178728650;178728649;178728648 | chr2:179593377;179593376;179593375 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/F | rs778339438 | None | 0.351 | N | 0.453 | 0.278 | 0.784326782449 | gnomAD-4.0.0 | 1.16351E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.52934E-05 | 0 | 0 |
V/I | rs778339438 | None | 0.003 | N | 0.217 | 0.06 | 0.551508998025 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.92E-06 | 0 |
V/I | rs778339438 | None | 0.003 | N | 0.217 | 0.06 | 0.551508998025 | gnomAD-4.0.0 | 3.42207E-06 | None | None | None | None | N | None | 2.98954E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 3.59844E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1827 | likely_benign | 0.138 | benign | -0.386 | Destabilizing | 0.047 | N | 0.205 | neutral | N | 0.459905793 | None | None | N |
V/C | 0.781 | likely_pathogenic | 0.7178 | pathogenic | -0.666 | Destabilizing | 0.94 | D | 0.389 | neutral | None | None | None | None | N |
V/D | 0.4255 | ambiguous | 0.2539 | benign | -0.44 | Destabilizing | 0.351 | N | 0.475 | neutral | N | 0.489228622 | None | None | N |
V/E | 0.2937 | likely_benign | 0.1871 | benign | -0.533 | Destabilizing | 0.129 | N | 0.409 | neutral | None | None | None | None | N |
V/F | 0.1346 | likely_benign | 0.1107 | benign | -0.616 | Destabilizing | 0.351 | N | 0.453 | neutral | N | 0.512990916 | None | None | N |
V/G | 0.2499 | likely_benign | 0.1789 | benign | -0.504 | Destabilizing | 0.523 | D | 0.489 | neutral | N | 0.475029961 | None | None | N |
V/H | 0.5118 | ambiguous | 0.399 | ambiguous | -0.055 | Destabilizing | 0.836 | D | 0.431 | neutral | None | None | None | None | N |
V/I | 0.0788 | likely_benign | 0.0735 | benign | -0.21 | Destabilizing | 0.003 | N | 0.217 | neutral | N | 0.456617558 | None | None | N |
V/K | 0.3369 | likely_benign | 0.2322 | benign | -0.455 | Destabilizing | 0.01 | N | 0.25 | neutral | None | None | None | None | N |
V/L | 0.133 | likely_benign | 0.1069 | benign | -0.21 | Destabilizing | 0.001 | N | 0.145 | neutral | N | 0.470989578 | None | None | N |
V/M | 0.1098 | likely_benign | 0.0982 | benign | -0.497 | Destabilizing | 0.01 | N | 0.195 | neutral | None | None | None | None | N |
V/N | 0.2955 | likely_benign | 0.2053 | benign | -0.252 | Destabilizing | 0.593 | D | 0.469 | neutral | None | None | None | None | N |
V/P | 0.4756 | ambiguous | 0.3565 | ambiguous | -0.237 | Destabilizing | 0.816 | D | 0.472 | neutral | None | None | None | None | N |
V/Q | 0.2726 | likely_benign | 0.2088 | benign | -0.446 | Destabilizing | 0.012 | N | 0.217 | neutral | None | None | None | None | N |
V/R | 0.293 | likely_benign | 0.22 | benign | 0.006 | Stabilizing | 0.264 | N | 0.468 | neutral | None | None | None | None | N |
V/S | 0.1896 | likely_benign | 0.1426 | benign | -0.553 | Destabilizing | 0.228 | N | 0.437 | neutral | None | None | None | None | N |
V/T | 0.1657 | likely_benign | 0.1338 | benign | -0.548 | Destabilizing | 0.228 | N | 0.235 | neutral | None | None | None | None | N |
V/W | 0.7308 | likely_pathogenic | 0.6309 | pathogenic | -0.717 | Destabilizing | 0.983 | D | 0.426 | neutral | None | None | None | None | N |
V/Y | 0.4759 | ambiguous | 0.3834 | ambiguous | -0.421 | Destabilizing | 0.836 | D | 0.457 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.