Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6496 | 19711;19712;19713 | chr2:178728338;178728337;178728336 | chr2:179593065;179593064;179593063 |
N2AB | 6179 | 18760;18761;18762 | chr2:178728338;178728337;178728336 | chr2:179593065;179593064;179593063 |
N2A | 5252 | 15979;15980;15981 | chr2:178728338;178728337;178728336 | chr2:179593065;179593064;179593063 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/F | rs376604816 | -1.158 | 0.949 | N | 0.467 | 0.509 | None | gnomAD-2.1.1 | 1.23E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.64E-05 | None | 0 | None | 0 | 1.81E-05 | 0 |
S/F | rs376604816 | -1.158 | 0.949 | N | 0.467 | 0.509 | None | gnomAD-4.0.0 | 7.53771E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.0551E-05 | None | 0 | 0 | 8.10037E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S/A | 0.1024 | likely_benign | 0.0995 | benign | -0.632 | Destabilizing | 0.008 | N | 0.219 | neutral | N | 0.497113734 | None | None | N |
S/C | 0.168 | likely_benign | 0.1639 | benign | -0.402 | Destabilizing | 0.986 | D | 0.402 | neutral | N | 0.493852862 | None | None | N |
S/D | 0.3188 | likely_benign | 0.3393 | benign | 0.424 | Stabilizing | 0.875 | D | 0.393 | neutral | None | None | None | None | N |
S/E | 0.471 | ambiguous | 0.4863 | ambiguous | 0.38 | Stabilizing | 0.775 | D | 0.389 | neutral | None | None | None | None | N |
S/F | 0.206 | likely_benign | 0.2148 | benign | -1.05 | Destabilizing | 0.949 | D | 0.467 | neutral | N | 0.511957117 | None | None | N |
S/G | 0.1023 | likely_benign | 0.1076 | benign | -0.812 | Destabilizing | 0.633 | D | 0.422 | neutral | None | None | None | None | N |
S/H | 0.3593 | ambiguous | 0.383 | ambiguous | -1.292 | Destabilizing | 0.996 | D | 0.373 | neutral | None | None | None | None | N |
S/I | 0.2584 | likely_benign | 0.2504 | benign | -0.276 | Destabilizing | 0.923 | D | 0.459 | neutral | None | None | None | None | N |
S/K | 0.651 | likely_pathogenic | 0.6885 | pathogenic | -0.395 | Destabilizing | 0.044 | N | 0.293 | neutral | None | None | None | None | N |
S/L | 0.1335 | likely_benign | 0.1357 | benign | -0.276 | Destabilizing | 0.633 | D | 0.443 | neutral | None | None | None | None | N |
S/M | 0.2533 | likely_benign | 0.252 | benign | -0.012 | Destabilizing | 0.996 | D | 0.375 | neutral | None | None | None | None | N |
S/N | 0.1485 | likely_benign | 0.1522 | benign | -0.23 | Destabilizing | 0.875 | D | 0.442 | neutral | None | None | None | None | N |
S/P | 0.6716 | likely_pathogenic | 0.6778 | pathogenic | -0.363 | Destabilizing | 0.949 | D | 0.358 | neutral | N | 0.499929248 | None | None | N |
S/Q | 0.5018 | ambiguous | 0.5288 | ambiguous | -0.417 | Destabilizing | 0.923 | D | 0.385 | neutral | None | None | None | None | N |
S/R | 0.5579 | ambiguous | 0.6031 | pathogenic | -0.303 | Destabilizing | 0.858 | D | 0.336 | neutral | None | None | None | None | N |
S/T | 0.0968 | likely_benign | 0.0966 | benign | -0.372 | Destabilizing | 0.722 | D | 0.427 | neutral | N | 0.459984528 | None | None | N |
S/V | 0.2486 | likely_benign | 0.2423 | benign | -0.363 | Destabilizing | 0.633 | D | 0.44 | neutral | None | None | None | None | N |
S/W | 0.373 | ambiguous | 0.3863 | ambiguous | -0.987 | Destabilizing | 0.996 | D | 0.603 | neutral | None | None | None | None | N |
S/Y | 0.1781 | likely_benign | 0.1851 | benign | -0.717 | Destabilizing | 0.983 | D | 0.457 | neutral | N | 0.475495117 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.