Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6529 | 19810;19811;19812 | chr2:178728239;178728238;178728237 | chr2:179592966;179592965;179592964 |
N2AB | 6212 | 18859;18860;18861 | chr2:178728239;178728238;178728237 | chr2:179592966;179592965;179592964 |
N2A | 5285 | 16078;16079;16080 | chr2:178728239;178728238;178728237 | chr2:179592966;179592965;179592964 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs758456020 | -1.228 | 0.934 | N | 0.526 | 0.323 | None | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 8.93E-06 | 0 |
L/F | rs758456020 | -1.228 | 0.934 | N | 0.526 | 0.323 | None | gnomAD-4.0.0 | 7.9629E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.72118E-06 | 2.86673E-05 | 3.02755E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1451 | likely_benign | 0.1775 | benign | -1.937 | Destabilizing | 0.525 | D | 0.451 | neutral | None | None | None | None | N |
L/C | 0.3947 | ambiguous | 0.4479 | ambiguous | -1.161 | Destabilizing | 0.998 | D | 0.559 | neutral | None | None | None | None | N |
L/D | 0.4831 | ambiguous | 0.567 | pathogenic | -1.466 | Destabilizing | 0.949 | D | 0.646 | neutral | None | None | None | None | N |
L/E | 0.233 | likely_benign | 0.2844 | benign | -1.351 | Destabilizing | 0.949 | D | 0.635 | neutral | None | None | None | None | N |
L/F | 0.1026 | likely_benign | 0.117 | benign | -1.161 | Destabilizing | 0.934 | D | 0.526 | neutral | N | 0.42864431 | None | None | N |
L/G | 0.3476 | ambiguous | 0.4113 | ambiguous | -2.382 | Highly Destabilizing | 0.728 | D | 0.61 | neutral | None | None | None | None | N |
L/H | 0.1461 | likely_benign | 0.1723 | benign | -1.679 | Destabilizing | 0.997 | D | 0.621 | neutral | N | 0.517034086 | None | None | N |
L/I | 0.0726 | likely_benign | 0.0772 | benign | -0.723 | Destabilizing | 0.051 | N | 0.283 | neutral | N | 0.370652012 | None | None | N |
L/K | 0.183 | likely_benign | 0.2068 | benign | -1.325 | Destabilizing | 0.842 | D | 0.603 | neutral | None | None | None | None | N |
L/M | 0.0903 | likely_benign | 0.0912 | benign | -0.586 | Destabilizing | 0.325 | N | 0.324 | neutral | None | None | None | None | N |
L/N | 0.2564 | likely_benign | 0.3033 | benign | -1.338 | Destabilizing | 0.949 | D | 0.634 | neutral | None | None | None | None | N |
L/P | 0.1521 | likely_benign | 0.2158 | benign | -1.1 | Destabilizing | 0.012 | N | 0.427 | neutral | N | 0.447808861 | None | None | N |
L/Q | 0.1172 | likely_benign | 0.1407 | benign | -1.348 | Destabilizing | 0.974 | D | 0.613 | neutral | None | None | None | None | N |
L/R | 0.1442 | likely_benign | 0.1679 | benign | -0.929 | Destabilizing | 0.934 | D | 0.609 | neutral | N | 0.46702934 | None | None | N |
L/S | 0.1609 | likely_benign | 0.2027 | benign | -2.049 | Highly Destabilizing | 0.067 | N | 0.38 | neutral | None | None | None | None | N |
L/T | 0.1156 | likely_benign | 0.1359 | benign | -1.798 | Destabilizing | 0.728 | D | 0.494 | neutral | None | None | None | None | N |
L/V | 0.0726 | likely_benign | 0.0783 | benign | -1.1 | Destabilizing | 0.454 | N | 0.446 | neutral | N | 0.399990698 | None | None | N |
L/W | 0.1684 | likely_benign | 0.1827 | benign | -1.383 | Destabilizing | 0.998 | D | 0.631 | neutral | None | None | None | None | N |
L/Y | 0.2497 | likely_benign | 0.2743 | benign | -1.098 | Destabilizing | 0.991 | D | 0.579 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.