Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6542 | 19849;19850;19851 | chr2:178728200;178728199;178728198 | chr2:179592927;179592926;179592925 |
N2AB | 6225 | 18898;18899;18900 | chr2:178728200;178728199;178728198 | chr2:179592927;179592926;179592925 |
N2A | 5298 | 16117;16118;16119 | chr2:178728200;178728199;178728198 | chr2:179592927;179592926;179592925 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/K | rs374003118 | None | 0.042 | N | 0.305 | 0.111 | 0.0297737177859 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 6.48E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
N/Y | rs750316803 | -0.418 | 0.602 | N | 0.478 | 0.257 | 0.415820034956 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.59E-05 | None | 0 | None | 0 | 0 | 0 |
N/Y | rs750316803 | -0.418 | 0.602 | N | 0.478 | 0.257 | 0.415820034956 | gnomAD-4.0.0 | 1.59365E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.77901E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.1741 | likely_benign | 0.2147 | benign | -0.575 | Destabilizing | 0.055 | N | 0.403 | neutral | None | None | None | None | N |
N/C | 0.2411 | likely_benign | 0.2974 | benign | 0.273 | Stabilizing | 0.002 | N | 0.345 | neutral | None | None | None | None | N |
N/D | 0.0956 | likely_benign | 0.111 | benign | -0.291 | Destabilizing | 0.081 | N | 0.323 | neutral | N | 0.453746959 | None | None | N |
N/E | 0.2545 | likely_benign | 0.3085 | benign | -0.299 | Destabilizing | 0.055 | N | 0.313 | neutral | None | None | None | None | N |
N/F | 0.3837 | ambiguous | 0.4581 | ambiguous | -0.847 | Destabilizing | 0.497 | N | 0.497 | neutral | None | None | None | None | N |
N/G | 0.209 | likely_benign | 0.2639 | benign | -0.788 | Destabilizing | 0.104 | N | 0.312 | neutral | None | None | None | None | N |
N/H | 0.075 | likely_benign | 0.0787 | benign | -0.814 | Destabilizing | 0.602 | D | 0.396 | neutral | N | 0.513720769 | None | None | N |
N/I | 0.2146 | likely_benign | 0.2506 | benign | -0.086 | Destabilizing | 0.001 | N | 0.328 | neutral | N | 0.503567007 | None | None | N |
N/K | 0.1749 | likely_benign | 0.21 | benign | 0.035 | Stabilizing | 0.042 | N | 0.305 | neutral | N | 0.464945387 | None | None | N |
N/L | 0.1955 | likely_benign | 0.231 | benign | -0.086 | Destabilizing | 0.02 | N | 0.453 | neutral | None | None | None | None | N |
N/M | 0.2924 | likely_benign | 0.3511 | ambiguous | 0.547 | Stabilizing | 0.497 | N | 0.469 | neutral | None | None | None | None | N |
N/P | 0.6322 | likely_pathogenic | 0.6555 | pathogenic | -0.222 | Destabilizing | 0.667 | D | 0.501 | neutral | None | None | None | None | N |
N/Q | 0.1916 | likely_benign | 0.2331 | benign | -0.625 | Destabilizing | 0.005 | N | 0.108 | neutral | None | None | None | None | N |
N/R | 0.1785 | likely_benign | 0.2089 | benign | 0.146 | Stabilizing | 0.22 | N | 0.325 | neutral | None | None | None | None | N |
N/S | 0.0812 | likely_benign | 0.0909 | benign | -0.362 | Destabilizing | 0.008 | N | 0.117 | neutral | N | 0.464772029 | None | None | N |
N/T | 0.1279 | likely_benign | 0.1495 | benign | -0.213 | Destabilizing | 0.001 | N | 0.111 | neutral | N | 0.49001719 | None | None | N |
N/V | 0.2073 | likely_benign | 0.2501 | benign | -0.222 | Destabilizing | 0.02 | N | 0.453 | neutral | None | None | None | None | N |
N/W | 0.658 | likely_pathogenic | 0.7378 | pathogenic | -0.716 | Destabilizing | 0.958 | D | 0.477 | neutral | None | None | None | None | N |
N/Y | 0.1304 | likely_benign | 0.145 | benign | -0.472 | Destabilizing | 0.602 | D | 0.478 | neutral | N | 0.491703722 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.