Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6569 | 19930;19931;19932 | chr2:178728119;178728118;178728117 | chr2:179592846;179592845;179592844 |
N2AB | 6252 | 18979;18980;18981 | chr2:178728119;178728118;178728117 | chr2:179592846;179592845;179592844 |
N2A | 5325 | 16198;16199;16200 | chr2:178728119;178728118;178728117 | chr2:179592846;179592845;179592844 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs1428304417 | -0.465 | 0.472 | N | 0.384 | 0.247 | 0.241664281697 | gnomAD-2.1.1 | 4.61E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 4.44E-05 | None | 0 | 0 | 0 |
T/A | rs1428304417 | -0.465 | 0.472 | N | 0.384 | 0.247 | 0.241664281697 | gnomAD-4.0.0 | 1.70176E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.61891E-05 | 0 |
T/I | None | None | 0.792 | N | 0.393 | 0.212 | 0.431490205687 | gnomAD-4.0.0 | 1.70386E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 2.55493E-04 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.1099 | likely_benign | 0.1166 | benign | -0.871 | Destabilizing | 0.472 | N | 0.384 | neutral | N | 0.492974165 | None | None | N |
T/C | 0.6122 | likely_pathogenic | 0.5952 | pathogenic | -0.636 | Destabilizing | 0.996 | D | 0.422 | neutral | None | None | None | None | N |
T/D | 0.4803 | ambiguous | 0.4928 | ambiguous | -0.559 | Destabilizing | 0.59 | D | 0.393 | neutral | None | None | None | None | N |
T/E | 0.343 | ambiguous | 0.3613 | ambiguous | -0.537 | Destabilizing | 0.59 | D | 0.4 | neutral | None | None | None | None | N |
T/F | 0.2344 | likely_benign | 0.2317 | benign | -0.84 | Destabilizing | 0.91 | D | 0.505 | neutral | None | None | None | None | N |
T/G | 0.4251 | ambiguous | 0.4631 | ambiguous | -1.155 | Destabilizing | 0.59 | D | 0.486 | neutral | None | None | None | None | N |
T/H | 0.2567 | likely_benign | 0.2501 | benign | -1.414 | Destabilizing | 0.953 | D | 0.478 | neutral | None | None | None | None | N |
T/I | 0.1788 | likely_benign | 0.1922 | benign | -0.198 | Destabilizing | 0.792 | D | 0.393 | neutral | N | 0.507182452 | None | None | N |
T/K | 0.2404 | likely_benign | 0.2599 | benign | -0.834 | Destabilizing | 0.59 | D | 0.41 | neutral | None | None | None | None | N |
T/L | 0.1091 | likely_benign | 0.1166 | benign | -0.198 | Destabilizing | 0.009 | N | 0.29 | neutral | None | None | None | None | N |
T/M | 0.0883 | likely_benign | 0.0948 | benign | 0.098 | Stabilizing | 0.91 | D | 0.42 | neutral | None | None | None | None | N |
T/N | 0.1535 | likely_benign | 0.1514 | benign | -0.861 | Destabilizing | 0.015 | N | 0.278 | neutral | N | 0.49744439 | None | None | N |
T/P | 0.4954 | ambiguous | 0.5475 | ambiguous | -0.39 | Destabilizing | 0.979 | D | 0.429 | neutral | D | 0.54126345 | None | None | N |
T/Q | 0.2456 | likely_benign | 0.2615 | benign | -1.027 | Destabilizing | 0.206 | N | 0.329 | neutral | None | None | None | None | N |
T/R | 0.1679 | likely_benign | 0.182 | benign | -0.603 | Destabilizing | 0.02 | N | 0.298 | neutral | None | None | None | None | N |
T/S | 0.151 | likely_benign | 0.1505 | benign | -1.133 | Destabilizing | 0.521 | D | 0.398 | neutral | D | 0.523285268 | None | None | N |
T/V | 0.1579 | likely_benign | 0.171 | benign | -0.39 | Destabilizing | 0.59 | D | 0.371 | neutral | None | None | None | None | N |
T/W | 0.5655 | likely_pathogenic | 0.5941 | pathogenic | -0.771 | Destabilizing | 0.996 | D | 0.593 | neutral | None | None | None | None | N |
T/Y | 0.2705 | likely_benign | 0.2745 | benign | -0.536 | Destabilizing | 0.984 | D | 0.499 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.