Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6691 | 20296;20297;20298 | chr2:178727294;178727293;178727292 | chr2:179592021;179592020;179592019 |
N2AB | 6374 | 19345;19346;19347 | chr2:178727294;178727293;178727292 | chr2:179592021;179592020;179592019 |
N2A | 5447 | 16564;16565;16566 | chr2:178727294;178727293;178727292 | chr2:179592021;179592020;179592019 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/T | None | None | 0.954 | D | 0.693 | 0.448 | 0.551550886788 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 6.17284E-04 | 0 | 0 | 0 |
I/V | rs1429994006 | None | None | N | 0.199 | 0.155 | 0.32471235697 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/V | rs1429994006 | None | None | N | 0.199 | 0.155 | 0.32471235697 | gnomAD-4.0.0 | 4.05997E-06 | None | None | None | None | N | None | 1.74715E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 3.6149E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.739 | likely_pathogenic | 0.7672 | pathogenic | -2.519 | Highly Destabilizing | 0.017 | N | 0.431 | neutral | None | None | None | None | N |
I/C | 0.9652 | likely_pathogenic | 0.9683 | pathogenic | -1.575 | Destabilizing | 0.996 | D | 0.763 | deleterious | None | None | None | None | N |
I/D | 0.9965 | likely_pathogenic | 0.9974 | pathogenic | -2.722 | Highly Destabilizing | 1.0 | D | 0.816 | deleterious | None | None | None | None | N |
I/E | 0.9897 | likely_pathogenic | 0.9925 | pathogenic | -2.434 | Highly Destabilizing | 0.998 | D | 0.797 | deleterious | None | None | None | None | N |
I/F | 0.5471 | ambiguous | 0.5239 | ambiguous | -1.401 | Destabilizing | 0.677 | D | 0.727 | prob.delet. | None | None | None | None | N |
I/G | 0.9725 | likely_pathogenic | 0.9796 | pathogenic | -3.116 | Highly Destabilizing | 0.75 | D | 0.763 | deleterious | None | None | None | None | N |
I/H | 0.9912 | likely_pathogenic | 0.993 | pathogenic | -2.614 | Highly Destabilizing | 1.0 | D | 0.804 | deleterious | None | None | None | None | N |
I/K | 0.9843 | likely_pathogenic | 0.9881 | pathogenic | -1.749 | Destabilizing | 0.936 | D | 0.792 | deleterious | D | 0.530987236 | None | None | N |
I/L | 0.201 | likely_benign | 0.1738 | benign | -0.758 | Destabilizing | None | N | 0.226 | neutral | D | 0.528309872 | None | None | N |
I/M | 0.2504 | likely_benign | 0.2176 | benign | -0.764 | Destabilizing | 0.487 | N | 0.66 | neutral | N | 0.512376002 | None | None | N |
I/N | 0.9625 | likely_pathogenic | 0.9731 | pathogenic | -2.25 | Highly Destabilizing | 1.0 | D | 0.821 | deleterious | None | None | None | None | N |
I/P | 0.9827 | likely_pathogenic | 0.9863 | pathogenic | -1.331 | Destabilizing | 1.0 | D | 0.817 | deleterious | None | None | None | None | N |
I/Q | 0.9852 | likely_pathogenic | 0.9881 | pathogenic | -1.983 | Destabilizing | 0.999 | D | 0.825 | deleterious | None | None | None | None | N |
I/R | 0.9729 | likely_pathogenic | 0.98 | pathogenic | -1.699 | Destabilizing | 0.995 | D | 0.821 | deleterious | D | 0.530987236 | None | None | N |
I/S | 0.913 | likely_pathogenic | 0.936 | pathogenic | -2.95 | Highly Destabilizing | 0.979 | D | 0.734 | prob.delet. | None | None | None | None | N |
I/T | 0.7165 | likely_pathogenic | 0.7413 | pathogenic | -2.503 | Highly Destabilizing | 0.954 | D | 0.693 | prob.neutral | D | 0.525789642 | None | None | N |
I/V | 0.1048 | likely_benign | 0.1079 | benign | -1.331 | Destabilizing | None | N | 0.199 | neutral | N | 0.408471321 | None | None | N |
I/W | 0.9883 | likely_pathogenic | 0.9879 | pathogenic | -1.79 | Destabilizing | 1.0 | D | 0.793 | deleterious | None | None | None | None | N |
I/Y | 0.9499 | likely_pathogenic | 0.9538 | pathogenic | -1.502 | Destabilizing | 0.968 | D | 0.777 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.