Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 7085 | 21478;21479;21480 | chr2:178724006;178724005;178724004 | chr2:179588733;179588732;179588731 |
N2AB | 6768 | 20527;20528;20529 | chr2:178724006;178724005;178724004 | chr2:179588733;179588732;179588731 |
N2A | 5841 | 17746;17747;17748 | chr2:178724006;178724005;178724004 | chr2:179588733;179588732;179588731 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/F | rs1477979232 | None | 0.863 | N | 0.367 | 0.297 | 0.806042141942 | gnomAD-4.0.0 | 1.59192E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.775E-05 | None | 0 | 0 | 0 | 0 | 0 |
V/G | rs762099144 | -0.453 | 0.473 | N | 0.421 | 0.214 | 0.751175389254 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.27E-05 | None | 0 | 0 | 0 |
V/G | rs762099144 | -0.453 | 0.473 | N | 0.421 | 0.214 | 0.751175389254 | gnomAD-4.0.0 | 3.1838E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 2.86599E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1155 | likely_benign | 0.1036 | benign | -0.472 | Destabilizing | 0.27 | N | 0.191 | neutral | N | 0.501925774 | None | None | N |
V/C | 0.6016 | likely_pathogenic | 0.6215 | pathogenic | -0.859 | Destabilizing | 0.995 | D | 0.344 | neutral | None | None | None | None | N |
V/D | 0.1621 | likely_benign | 0.1544 | benign | -0.183 | Destabilizing | 0.642 | D | 0.421 | neutral | D | 0.524245273 | None | None | N |
V/E | 0.1685 | likely_benign | 0.1577 | benign | -0.271 | Destabilizing | 0.543 | D | 0.366 | neutral | None | None | None | None | N |
V/F | 0.0984 | likely_benign | 0.0972 | benign | -0.632 | Destabilizing | 0.863 | D | 0.367 | neutral | N | 0.490643534 | None | None | N |
V/G | 0.1393 | likely_benign | 0.134 | benign | -0.588 | Destabilizing | 0.473 | N | 0.421 | neutral | N | 0.506814305 | None | None | N |
V/H | 0.3353 | likely_benign | 0.3189 | benign | -0.046 | Destabilizing | 0.944 | D | 0.377 | neutral | None | None | None | None | N |
V/I | 0.0759 | likely_benign | 0.0733 | benign | -0.303 | Destabilizing | 0.27 | N | 0.269 | neutral | N | 0.480590496 | None | None | N |
V/K | 0.2217 | likely_benign | 0.2023 | benign | -0.457 | Destabilizing | 0.543 | D | 0.359 | neutral | None | None | None | None | N |
V/L | 0.1258 | likely_benign | 0.1168 | benign | -0.303 | Destabilizing | 0.002 | N | 0.12 | neutral | N | 0.494423798 | None | None | N |
V/M | 0.1273 | likely_benign | 0.1143 | benign | -0.602 | Destabilizing | 0.176 | N | 0.162 | neutral | None | None | None | None | N |
V/N | 0.1486 | likely_benign | 0.1394 | benign | -0.337 | Destabilizing | 0.704 | D | 0.394 | neutral | None | None | None | None | N |
V/P | 0.2446 | likely_benign | 0.2285 | benign | -0.329 | Destabilizing | 0.944 | D | 0.399 | neutral | None | None | None | None | N |
V/Q | 0.2035 | likely_benign | 0.1868 | benign | -0.497 | Destabilizing | 0.085 | N | 0.224 | neutral | None | None | None | None | N |
V/R | 0.1814 | likely_benign | 0.1683 | benign | -0.009 | Destabilizing | 0.704 | D | 0.416 | neutral | None | None | None | None | N |
V/S | 0.1156 | likely_benign | 0.1073 | benign | -0.707 | Destabilizing | 0.031 | N | 0.226 | neutral | None | None | None | None | N |
V/T | 0.1198 | likely_benign | 0.107 | benign | -0.689 | Destabilizing | 0.031 | N | 0.173 | neutral | None | None | None | None | N |
V/W | 0.6105 | likely_pathogenic | 0.5983 | pathogenic | -0.7 | Destabilizing | 0.995 | D | 0.4 | neutral | None | None | None | None | N |
V/Y | 0.3393 | likely_benign | 0.3365 | benign | -0.429 | Destabilizing | 0.981 | D | 0.362 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.