Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 7438 | 22537;22538;22539 | chr2:178722475;178722474;178722473 | chr2:179587202;179587201;179587200 |
N2AB | 7121 | 21586;21587;21588 | chr2:178722475;178722474;178722473 | chr2:179587202;179587201;179587200 |
N2A | 6194 | 18805;18806;18807 | chr2:178722475;178722474;178722473 | chr2:179587202;179587201;179587200 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs371114946 | -1.634 | 0.002 | N | 0.297 | 0.321 | None | gnomAD-2.1.1 | 2.5E-05 | None | None | None | None | N | None | 2.89424E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
L/F | rs371114946 | -1.634 | 0.002 | N | 0.297 | 0.321 | None | gnomAD-3.1.2 | 7.23E-05 | None | None | None | None | N | None | 2.65457E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
L/F | rs371114946 | -1.634 | 0.002 | N | 0.297 | 0.321 | None | gnomAD-4.0.0 | 1.21799E-05 | None | None | None | None | N | None | 2.0971E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.7795 | likely_pathogenic | 0.8129 | pathogenic | -2.106 | Highly Destabilizing | 0.617 | D | 0.692 | prob.neutral | None | None | None | None | N |
L/C | 0.7895 | likely_pathogenic | 0.7992 | pathogenic | -1.428 | Destabilizing | 0.992 | D | 0.785 | deleterious | None | None | None | None | N |
L/D | 0.9917 | likely_pathogenic | 0.9941 | pathogenic | -2.58 | Highly Destabilizing | 0.92 | D | 0.864 | deleterious | None | None | None | None | N |
L/E | 0.9563 | likely_pathogenic | 0.964 | pathogenic | -2.28 | Highly Destabilizing | 0.85 | D | 0.832 | deleterious | None | None | None | None | N |
L/F | 0.0613 | likely_benign | 0.0482 | benign | -1.207 | Destabilizing | 0.002 | N | 0.297 | neutral | N | 0.505921023 | None | None | N |
L/G | 0.9475 | likely_pathogenic | 0.9596 | pathogenic | -2.702 | Highly Destabilizing | 0.92 | D | 0.826 | deleterious | None | None | None | None | N |
L/H | 0.792 | likely_pathogenic | 0.8233 | pathogenic | -2.372 | Highly Destabilizing | 0.99 | D | 0.875 | deleterious | D | 0.652167902 | None | None | N |
L/I | 0.1236 | likely_benign | 0.1269 | benign | -0.35 | Destabilizing | 0.379 | N | 0.599 | neutral | D | 0.574505261 | None | None | N |
L/K | 0.9456 | likely_pathogenic | 0.9548 | pathogenic | -1.485 | Destabilizing | 0.021 | N | 0.638 | neutral | None | None | None | None | N |
L/M | 0.123 | likely_benign | 0.1329 | benign | -0.476 | Destabilizing | 0.127 | N | 0.469 | neutral | None | None | None | None | N |
L/N | 0.9611 | likely_pathogenic | 0.972 | pathogenic | -2.077 | Highly Destabilizing | 0.92 | D | 0.869 | deleterious | None | None | None | None | N |
L/P | 0.9797 | likely_pathogenic | 0.985 | pathogenic | -0.92 | Destabilizing | 0.963 | D | 0.871 | deleterious | D | 0.651966098 | None | None | N |
L/Q | 0.8138 | likely_pathogenic | 0.8462 | pathogenic | -1.761 | Destabilizing | 0.85 | D | 0.846 | deleterious | None | None | None | None | N |
L/R | 0.8815 | likely_pathogenic | 0.8975 | pathogenic | -1.612 | Destabilizing | 0.681 | D | 0.801 | deleterious | D | 0.651966098 | None | None | N |
L/S | 0.9187 | likely_pathogenic | 0.9376 | pathogenic | -2.721 | Highly Destabilizing | 0.617 | D | 0.767 | deleterious | None | None | None | None | N |
L/T | 0.8505 | likely_pathogenic | 0.8754 | pathogenic | -2.246 | Highly Destabilizing | 0.766 | D | 0.721 | prob.delet. | None | None | None | None | N |
L/V | 0.1469 | likely_benign | 0.151 | benign | -0.92 | Destabilizing | 0.201 | N | 0.616 | neutral | D | 0.599507605 | None | None | N |
L/W | 0.4239 | ambiguous | 0.432 | ambiguous | -1.595 | Destabilizing | 0.992 | D | 0.849 | deleterious | None | None | None | None | N |
L/Y | 0.4977 | ambiguous | 0.517 | ambiguous | -1.252 | Destabilizing | 0.447 | N | 0.762 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.