Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 8102 | 24529;24530;24531 | chr2:178718896;178718895;178718894 | chr2:179583623;179583622;179583621 |
N2AB | 7785 | 23578;23579;23580 | chr2:178718896;178718895;178718894 | chr2:179583623;179583622;179583621 |
N2A | 6858 | 20797;20798;20799 | chr2:178718896;178718895;178718894 | chr2:179583623;179583622;179583621 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/K | rs748064860 | -0.15 | None | N | 0.072 | 0.088 | 0.294206760003 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 6.48E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
R/K | rs748064860 | -0.15 | None | N | 0.072 | 0.088 | 0.294206760003 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/K | rs748064860 | -0.15 | None | N | 0.072 | 0.088 | 0.294206760003 | gnomAD-4.0.0 | 6.57514E-06 | None | None | None | None | N | None | 2.41441E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.2983 | likely_benign | 0.2573 | benign | -0.5 | Destabilizing | 0.007 | N | 0.143 | neutral | None | None | None | None | N |
R/C | 0.2223 | likely_benign | 0.1698 | benign | -0.647 | Destabilizing | 0.676 | D | 0.175 | neutral | None | None | None | None | N |
R/D | 0.6672 | likely_pathogenic | 0.6086 | pathogenic | 0.059 | Stabilizing | 0.072 | N | 0.22 | neutral | None | None | None | None | N |
R/E | 0.2979 | likely_benign | 0.2747 | benign | 0.174 | Stabilizing | 0.016 | N | 0.159 | neutral | None | None | None | None | N |
R/F | 0.5101 | ambiguous | 0.4626 | ambiguous | -0.54 | Destabilizing | 0.356 | N | 0.216 | neutral | None | None | None | None | N |
R/G | 0.1948 | likely_benign | 0.1669 | benign | -0.757 | Destabilizing | 0.012 | N | 0.205 | neutral | N | 0.520514321 | None | None | N |
R/H | 0.1032 | likely_benign | 0.0914 | benign | -1.198 | Destabilizing | 0.356 | N | 0.277 | neutral | None | None | None | None | N |
R/I | 0.2456 | likely_benign | 0.2322 | benign | 0.169 | Stabilizing | 0.055 | N | 0.275 | neutral | N | 0.514433711 | None | None | N |
R/K | 0.0822 | likely_benign | 0.0833 | benign | -0.405 | Destabilizing | None | N | 0.072 | neutral | N | 0.424235781 | None | None | N |
R/L | 0.2416 | likely_benign | 0.2096 | benign | 0.169 | Stabilizing | 0.031 | N | 0.23 | neutral | None | None | None | None | N |
R/M | 0.2313 | likely_benign | 0.2221 | benign | -0.311 | Destabilizing | 0.628 | D | 0.223 | neutral | None | None | None | None | N |
R/N | 0.4907 | ambiguous | 0.4499 | ambiguous | -0.194 | Destabilizing | 0.016 | N | 0.152 | neutral | None | None | None | None | N |
R/P | 0.9049 | likely_pathogenic | 0.8716 | pathogenic | -0.033 | Destabilizing | 0.072 | N | 0.244 | neutral | None | None | None | None | N |
R/Q | 0.0973 | likely_benign | 0.0913 | benign | -0.262 | Destabilizing | 0.038 | N | 0.159 | neutral | None | None | None | None | N |
R/S | 0.3367 | likely_benign | 0.2928 | benign | -0.805 | Destabilizing | None | N | 0.133 | neutral | N | 0.463138099 | None | None | N |
R/T | 0.1544 | likely_benign | 0.1426 | benign | -0.514 | Destabilizing | None | N | 0.136 | neutral | N | 0.468063916 | None | None | N |
R/V | 0.3288 | likely_benign | 0.2997 | benign | -0.033 | Destabilizing | 0.072 | N | 0.241 | neutral | None | None | None | None | N |
R/W | 0.1802 | likely_benign | 0.155 | benign | -0.406 | Destabilizing | 0.864 | D | 0.188 | neutral | None | None | None | None | N |
R/Y | 0.4143 | ambiguous | 0.3526 | ambiguous | -0.053 | Destabilizing | 0.356 | N | 0.221 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.