Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 8646 | 26161;26162;26163 | chr2:178715250;178715249;178715248 | chr2:179579977;179579976;179579975 |
N2AB | 8329 | 25210;25211;25212 | chr2:178715250;178715249;178715248 | chr2:179579977;179579976;179579975 |
N2A | 7402 | 22429;22430;22431 | chr2:178715250;178715249;178715248 | chr2:179579977;179579976;179579975 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/C | rs72648987 | -0.197 | 0.001 | N | 0.207 | 0.084 | None | gnomAD-2.1.1 | 1.65369E-02 | None | None | None | None | I | None | 3.87565E-03 | 1.41441E-02 | None | 1.25052E-02 | 1.04998E-04 | None | 1.49592E-02 | None | 2.11205E-02 | 2.17043E-02 | 1.96136E-02 |
R/C | rs72648987 | -0.197 | 0.001 | N | 0.207 | 0.084 | None | gnomAD-3.1.2 | 1.65713E-02 | None | None | None | None | I | None | 4.66116E-03 | 2.50492E-02 | 3.28947E-03 | 1.09447E-02 | 1.9305E-04 | None | 2.10576E-02 | 1.89873E-02 | 2.28282E-02 | 1.66182E-02 | 1.96737E-02 |
R/C | rs72648987 | -0.197 | 0.001 | N | 0.207 | 0.084 | None | 1000 genomes | 9.38498E-03 | None | None | None | None | I | None | 0 | 1.59E-02 | None | None | 0 | 2.58E-02 | None | None | None | 1.02E-02 | None |
R/C | rs72648987 | -0.197 | 0.001 | N | 0.207 | 0.084 | None | gnomAD-4.0.0 | 1.88575E-02 | None | None | None | None | I | None | 4.02813E-03 | 1.75393E-02 | None | 1.19703E-02 | 8.94334E-05 | None | 2.25869E-02 | 1.83596E-02 | 2.0923E-02 | 1.49913E-02 | 1.7455E-02 |
R/H | rs144587343 | -0.836 | None | N | 0.142 | 0.06 | None | gnomAD-2.1.1 | 7.37E-05 | None | None | None | None | I | None | 4.16458E-04 | 2.99E-05 | None | 0 | 0 | None | 1.41064E-04 | None | 0 | 3.2E-05 | 1.46284E-04 |
R/H | rs144587343 | -0.836 | None | N | 0.142 | 0.06 | None | gnomAD-3.1.2 | 1.64619E-04 | None | None | None | None | I | None | 3.87203E-04 | 1.3113E-04 | 0 | 0 | 0 | None | 0 | 0 | 7.36E-05 | 2.07469E-04 | 4.79846E-04 |
R/H | rs144587343 | -0.836 | None | N | 0.142 | 0.06 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | I | None | 1.5E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
R/H | rs144587343 | -0.836 | None | N | 0.142 | 0.06 | None | gnomAD-4.0.0 | 1.07994E-04 | None | None | None | None | I | None | 4.31034E-04 | 6.88373E-05 | None | 0 | 2.23444E-05 | None | 0 | 0 | 1.03867E-04 | 7.88555E-05 | 1.13129E-04 |
R/L | rs144587343 | None | None | N | 0.089 | 0.078 | 0.144782658237 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 6.56E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
R/L | rs144587343 | None | None | N | 0.089 | 0.078 | 0.144782658237 | gnomAD-4.0.0 | 1.24858E-06 | None | None | None | None | I | None | 0 | 1.72153E-05 | None | 0 | 0 | None | 0 | 0 | 8.51362E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.1773 | likely_benign | 0.1593 | benign | -0.061 | Destabilizing | 0.004 | N | 0.182 | neutral | None | None | None | None | I |
R/C | 0.0884 | likely_benign | 0.0988 | benign | -0.121 | Destabilizing | 0.001 | N | 0.207 | neutral | N | 0.469599059 | None | None | I |
R/D | 0.3789 | ambiguous | 0.3853 | ambiguous | -0.073 | Destabilizing | 0.02 | N | 0.392 | neutral | None | None | None | None | I |
R/E | 0.1947 | likely_benign | 0.1931 | benign | 0.011 | Stabilizing | 0.003 | N | 0.185 | neutral | None | None | None | None | I |
R/F | 0.2457 | likely_benign | 0.2391 | benign | -0.134 | Destabilizing | 0.008 | N | 0.443 | neutral | None | None | None | None | I |
R/G | 0.121 | likely_benign | 0.1131 | benign | -0.3 | Destabilizing | 0.016 | N | 0.25 | neutral | N | 0.463499806 | None | None | I |
R/H | 0.0706 | likely_benign | 0.0741 | benign | -0.807 | Destabilizing | None | N | 0.142 | neutral | N | 0.4694257 | None | None | I |
R/I | 0.1022 | likely_benign | 0.1012 | benign | 0.547 | Stabilizing | None | N | 0.187 | neutral | None | None | None | None | I |
R/K | 0.0846 | likely_benign | 0.0844 | benign | -0.156 | Destabilizing | 0.001 | N | 0.225 | neutral | None | None | None | None | I |
R/L | 0.1017 | likely_benign | 0.1053 | benign | 0.547 | Stabilizing | None | N | 0.089 | neutral | N | 0.400891122 | None | None | I |
R/M | 0.1398 | likely_benign | 0.135 | benign | 0.086 | Stabilizing | 0.056 | N | 0.298 | neutral | None | None | None | None | I |
R/N | 0.2561 | likely_benign | 0.2553 | benign | 0.165 | Stabilizing | 0.02 | N | 0.217 | neutral | None | None | None | None | I |
R/P | 0.5788 | likely_pathogenic | 0.5899 | pathogenic | 0.366 | Stabilizing | 0.072 | N | 0.447 | neutral | N | 0.482637353 | None | None | I |
R/Q | 0.0716 | likely_benign | 0.074 | benign | 0.064 | Stabilizing | 0.029 | N | 0.31 | neutral | None | None | None | None | I |
R/S | 0.1713 | likely_benign | 0.156 | benign | -0.23 | Destabilizing | None | N | 0.121 | neutral | N | 0.404702218 | None | None | I |
R/T | 0.1008 | likely_benign | 0.0908 | benign | 0.002 | Stabilizing | None | N | 0.083 | neutral | None | None | None | None | I |
R/V | 0.1491 | likely_benign | 0.1442 | benign | 0.366 | Stabilizing | None | N | 0.153 | neutral | None | None | None | None | I |
R/W | 0.0955 | likely_benign | 0.0982 | benign | -0.102 | Destabilizing | 0.618 | D | 0.287 | neutral | None | None | None | None | I |
R/Y | 0.1651 | likely_benign | 0.1738 | benign | 0.276 | Stabilizing | None | N | 0.157 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.