Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 8700 | 26323;26324;26325 | chr2:178715088;178715087;178715086 | chr2:179579815;179579814;179579813 |
N2AB | 8383 | 25372;25373;25374 | chr2:178715088;178715087;178715086 | chr2:179579815;179579814;179579813 |
N2A | 7456 | 22591;22592;22593 | chr2:178715088;178715087;178715086 | chr2:179579815;179579814;179579813 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/N | rs1404662292 | -3.013 | 1.0 | N | 0.88 | 0.545 | 0.809427183511 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.89E-06 | 0 |
I/N | rs1404662292 | -3.013 | 1.0 | N | 0.88 | 0.545 | 0.809427183511 | gnomAD-4.0.0 | 1.59141E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 3.02389E-05 |
I/V | None | None | 0.163 | N | 0.363 | 0.103 | 0.335910606209 | gnomAD-4.0.0 | 1.36847E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79905E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.741 | likely_pathogenic | 0.7659 | pathogenic | -2.866 | Highly Destabilizing | 0.968 | D | 0.726 | prob.delet. | None | None | None | None | N |
I/C | 0.8667 | likely_pathogenic | 0.8664 | pathogenic | -2.191 | Highly Destabilizing | 1.0 | D | 0.803 | deleterious | None | None | None | None | N |
I/D | 0.9958 | likely_pathogenic | 0.9959 | pathogenic | -3.493 | Highly Destabilizing | 1.0 | D | 0.879 | deleterious | None | None | None | None | N |
I/E | 0.9899 | likely_pathogenic | 0.9908 | pathogenic | -3.205 | Highly Destabilizing | 1.0 | D | 0.864 | deleterious | None | None | None | None | N |
I/F | 0.3428 | ambiguous | 0.4171 | ambiguous | -1.751 | Destabilizing | 0.987 | D | 0.72 | prob.delet. | N | 0.487992818 | None | None | N |
I/G | 0.9625 | likely_pathogenic | 0.9678 | pathogenic | -3.387 | Highly Destabilizing | 0.999 | D | 0.86 | deleterious | None | None | None | None | N |
I/H | 0.9727 | likely_pathogenic | 0.9778 | pathogenic | -3.043 | Highly Destabilizing | 1.0 | D | 0.876 | deleterious | None | None | None | None | N |
I/K | 0.9768 | likely_pathogenic | 0.9804 | pathogenic | -2.299 | Highly Destabilizing | 0.998 | D | 0.858 | deleterious | None | None | None | None | N |
I/L | 0.1023 | likely_benign | 0.114 | benign | -1.27 | Destabilizing | 0.001 | N | 0.309 | neutral | N | 0.297984027 | None | None | N |
I/M | 0.15 | likely_benign | 0.1793 | benign | -1.583 | Destabilizing | 0.959 | D | 0.658 | neutral | N | 0.498036454 | None | None | N |
I/N | 0.9333 | likely_pathogenic | 0.9405 | pathogenic | -2.991 | Highly Destabilizing | 1.0 | D | 0.88 | deleterious | N | 0.478684668 | None | None | N |
I/P | 0.9883 | likely_pathogenic | 0.9901 | pathogenic | -1.799 | Destabilizing | 1.0 | D | 0.88 | deleterious | None | None | None | None | N |
I/Q | 0.9708 | likely_pathogenic | 0.9753 | pathogenic | -2.662 | Highly Destabilizing | 1.0 | D | 0.883 | deleterious | None | None | None | None | N |
I/R | 0.9609 | likely_pathogenic | 0.9678 | pathogenic | -2.334 | Highly Destabilizing | 1.0 | D | 0.879 | deleterious | None | None | None | None | N |
I/S | 0.8698 | likely_pathogenic | 0.8894 | pathogenic | -3.424 | Highly Destabilizing | 1.0 | D | 0.833 | deleterious | N | 0.467328362 | None | None | N |
I/T | 0.8138 | likely_pathogenic | 0.8287 | pathogenic | -2.995 | Highly Destabilizing | 0.999 | D | 0.757 | deleterious | N | 0.478684668 | None | None | N |
I/V | 0.0962 | likely_benign | 0.0891 | benign | -1.799 | Destabilizing | 0.163 | N | 0.363 | neutral | N | 0.457824627 | None | None | N |
I/W | 0.963 | likely_pathogenic | 0.9732 | pathogenic | -2.056 | Highly Destabilizing | 1.0 | D | 0.867 | deleterious | None | None | None | None | N |
I/Y | 0.8792 | likely_pathogenic | 0.9057 | pathogenic | -1.99 | Destabilizing | 0.999 | D | 0.801 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.