Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 9285 | 28078;28079;28080 | chr2:178711977;178711976;178711975 | chr2:179576704;179576703;179576702 |
N2AB | 8968 | 27127;27128;27129 | chr2:178711977;178711976;178711975 | chr2:179576704;179576703;179576702 |
N2A | 8041 | 24346;24347;24348 | chr2:178711977;178711976;178711975 | chr2:179576704;179576703;179576702 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/A | rs1560573999 | None | 0.007 | N | 0.225 | 0.248 | 0.297718772494 | gnomAD-2.1.1 | 3.18E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 6.48E-05 | 0 |
E/A | rs1560573999 | None | 0.007 | N | 0.225 | 0.248 | 0.297718772494 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
E/A | rs1560573999 | None | 0.007 | N | 0.225 | 0.248 | 0.297718772494 | gnomAD-4.0.0 | 6.5722E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.4699E-05 | 0 | 0 |
E/K | None | None | 0.549 | N | 0.391 | 0.215 | 0.283761946502 | gnomAD-4.0.0 | 1.60823E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.8929E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/A | 0.1243 | likely_benign | 0.1379 | benign | -0.482 | Destabilizing | 0.007 | N | 0.225 | neutral | N | 0.465509187 | None | None | I |
E/C | 0.7928 | likely_pathogenic | 0.8015 | pathogenic | -0.171 | Destabilizing | 0.992 | D | 0.559 | neutral | None | None | None | None | I |
E/D | 0.1676 | likely_benign | 0.1735 | benign | -0.444 | Destabilizing | 0.004 | N | 0.141 | neutral | N | 0.484076306 | None | None | I |
E/F | 0.6321 | likely_pathogenic | 0.6413 | pathogenic | -0.245 | Destabilizing | 0.972 | D | 0.562 | neutral | None | None | None | None | I |
E/G | 0.1747 | likely_benign | 0.2094 | benign | -0.7 | Destabilizing | 0.334 | N | 0.548 | neutral | D | 0.53631328 | None | None | I |
E/H | 0.3874 | ambiguous | 0.4226 | ambiguous | -0.007 | Destabilizing | 0.972 | D | 0.469 | neutral | None | None | None | None | I |
E/I | 0.3024 | likely_benign | 0.3363 | benign | 0.065 | Stabilizing | 0.92 | D | 0.562 | neutral | None | None | None | None | I |
E/K | 0.114 | likely_benign | 0.1488 | benign | 0.233 | Stabilizing | 0.549 | D | 0.391 | neutral | N | 0.452057101 | None | None | I |
E/L | 0.378 | ambiguous | 0.4208 | ambiguous | 0.065 | Stabilizing | 0.617 | D | 0.575 | neutral | None | None | None | None | I |
E/M | 0.351 | ambiguous | 0.383 | ambiguous | 0.15 | Stabilizing | 0.992 | D | 0.547 | neutral | None | None | None | None | I |
E/N | 0.234 | likely_benign | 0.2545 | benign | -0.167 | Destabilizing | 0.447 | N | 0.397 | neutral | None | None | None | None | I |
E/P | 0.8838 | likely_pathogenic | 0.8967 | pathogenic | -0.097 | Destabilizing | 0.92 | D | 0.489 | neutral | None | None | None | None | I |
E/Q | 0.1146 | likely_benign | 0.1282 | benign | -0.128 | Destabilizing | 0.549 | D | 0.463 | neutral | N | 0.485652386 | None | None | I |
E/R | 0.2113 | likely_benign | 0.2537 | benign | 0.498 | Stabilizing | 0.92 | D | 0.435 | neutral | None | None | None | None | I |
E/S | 0.152 | likely_benign | 0.1548 | benign | -0.336 | Destabilizing | 0.026 | N | 0.133 | neutral | None | None | None | None | I |
E/T | 0.1607 | likely_benign | 0.1681 | benign | -0.155 | Destabilizing | 0.447 | N | 0.473 | neutral | None | None | None | None | I |
E/V | 0.1802 | likely_benign | 0.1977 | benign | -0.097 | Destabilizing | 0.549 | D | 0.565 | neutral | N | 0.50102727 | None | None | I |
E/W | 0.8559 | likely_pathogenic | 0.8783 | pathogenic | -0.041 | Destabilizing | 0.992 | D | 0.621 | neutral | None | None | None | None | I |
E/Y | 0.545 | ambiguous | 0.5738 | pathogenic | 0.013 | Stabilizing | 0.972 | D | 0.557 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.