Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 9367 | 28324;28325;28326 | chr2:178711137;178711136;178711135 | chr2:179575864;179575863;179575862 |
N2AB | 9050 | 27373;27374;27375 | chr2:178711137;178711136;178711135 | chr2:179575864;179575863;179575862 |
N2A | 8123 | 24592;24593;24594 | chr2:178711137;178711136;178711135 | chr2:179575864;179575863;179575862 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs748483786 | -1.428 | None | None | 0.418 | 0.078 | 0.352693368174 | gnomAD-2.1.1 | 1.43E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 3.12E-05 | 0 |
L/F | rs748483786 | -1.428 | None | None | 0.418 | 0.078 | 0.352693368174 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 0 | 0 |
L/F | rs748483786 | -1.428 | None | None | 0.418 | 0.078 | 0.352693368174 | gnomAD-4.0.0 | 2.23083E-05 | None | None | None | None | N | None | 0 | 1.66689E-05 | None | 0 | 0 | None | 0 | 1.64474E-04 | 2.79708E-05 | 0 | 1.60092E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1885 | likely_benign | 0.2139 | benign | -1.845 | Destabilizing | 0.149 | N | 0.729 | prob.delet. | None | None | None | None | N |
L/C | 0.4263 | ambiguous | 0.4306 | ambiguous | -1.357 | Destabilizing | 0.935 | D | 0.809 | deleterious | None | None | None | None | N |
L/D | 0.38 | ambiguous | 0.4864 | ambiguous | -0.645 | Destabilizing | 0.555 | D | 0.867 | deleterious | None | None | None | None | N |
L/E | 0.2393 | likely_benign | 0.3157 | benign | -0.545 | Destabilizing | 0.38 | N | 0.857 | deleterious | None | None | None | None | N |
L/F | 0.0875 | likely_benign | 0.093 | benign | -1.093 | Destabilizing | None | N | 0.418 | neutral | None | None | None | None | N |
L/G | 0.4164 | ambiguous | 0.4964 | ambiguous | -2.258 | Highly Destabilizing | 0.555 | D | 0.847 | deleterious | None | None | None | None | N |
L/H | 0.095 | likely_benign | 0.1135 | benign | -1.276 | Destabilizing | None | N | 0.577 | neutral | None | None | None | None | N |
L/I | 0.1059 | likely_benign | 0.1125 | benign | -0.74 | Destabilizing | 0.062 | N | 0.671 | neutral | None | None | None | None | N |
L/K | 0.2525 | likely_benign | 0.3374 | benign | -1.165 | Destabilizing | 0.38 | N | 0.849 | deleterious | None | None | None | None | N |
L/M | 0.107 | likely_benign | 0.1044 | benign | -0.747 | Destabilizing | 0.555 | D | 0.711 | prob.delet. | None | None | None | None | N |
L/N | 0.2109 | likely_benign | 0.2671 | benign | -1.161 | Destabilizing | 0.38 | N | 0.858 | deleterious | None | None | None | None | N |
L/P | 0.6569 | likely_pathogenic | 0.8059 | pathogenic | -1.08 | Destabilizing | 0.741 | D | 0.882 | deleterious | None | None | None | None | N |
L/Q | 0.1054 | likely_benign | 0.1302 | benign | -1.142 | Destabilizing | 0.38 | N | 0.866 | deleterious | None | None | None | None | N |
L/R | 0.1787 | likely_benign | 0.2419 | benign | -0.763 | Destabilizing | 0.317 | N | 0.857 | deleterious | None | None | None | None | N |
L/S | 0.1592 | likely_benign | 0.1804 | benign | -1.984 | Destabilizing | 0.149 | N | 0.84 | deleterious | None | None | None | None | N |
L/T | 0.1689 | likely_benign | 0.1912 | benign | -1.73 | Destabilizing | 0.262 | N | 0.806 | deleterious | None | None | None | None | N |
L/V | 0.101 | likely_benign | 0.1064 | benign | -1.08 | Destabilizing | 0.062 | N | 0.66 | neutral | None | None | None | None | N |
L/W | 0.1446 | likely_benign | 0.1805 | benign | -1.141 | Destabilizing | 0.824 | D | 0.853 | deleterious | None | None | None | None | N |
L/Y | 0.1671 | likely_benign | 0.1884 | benign | -0.93 | Destabilizing | 0.081 | N | 0.777 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.