Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 9403 | 28432;28433;28434 | chr2:178710890;178710889;178710888 | chr2:179575617;179575616;179575615 |
N2AB | 9086 | 27481;27482;27483 | chr2:178710890;178710889;178710888 | chr2:179575617;179575616;179575615 |
N2A | 8159 | 24700;24701;24702 | chr2:178710890;178710889;178710888 | chr2:179575617;179575616;179575615 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/V | rs752742472 | -1.449 | None | None | 0.435 | 0.082 | 0.0716867268079 | gnomAD-2.1.1 | 8.06E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 0 | 0 |
L/V | rs752742472 | -1.449 | None | None | 0.435 | 0.082 | 0.0716867268079 | gnomAD-4.0.0 | 2.73738E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 4.63811E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1405 | likely_benign | 0.1782 | benign | -2.362 | Highly Destabilizing | 0.035 | N | 0.579 | neutral | None | None | None | None | N |
L/C | 0.5637 | ambiguous | 0.6023 | pathogenic | -1.441 | Destabilizing | 0.824 | D | 0.633 | neutral | None | None | None | None | N |
L/D | 0.8854 | likely_pathogenic | 0.9279 | pathogenic | -2.108 | Highly Destabilizing | 0.38 | N | 0.73 | prob.delet. | None | None | None | None | N |
L/E | 0.6794 | likely_pathogenic | 0.7407 | pathogenic | -1.958 | Destabilizing | 0.38 | N | 0.723 | prob.delet. | None | None | None | None | N |
L/F | 0.3713 | ambiguous | 0.4448 | ambiguous | -1.414 | Destabilizing | 0.317 | N | 0.646 | neutral | None | None | None | None | N |
L/G | 0.5059 | ambiguous | 0.5963 | pathogenic | -2.852 | Highly Destabilizing | 0.38 | N | 0.725 | prob.delet. | None | None | None | None | N |
L/H | 0.6255 | likely_pathogenic | 0.7199 | pathogenic | -2.142 | Highly Destabilizing | 0.915 | D | 0.694 | prob.neutral | None | None | None | None | N |
L/I | 0.0913 | likely_benign | 0.1034 | benign | -0.985 | Destabilizing | None | N | 0.209 | neutral | None | None | None | None | N |
L/K | 0.6967 | likely_pathogenic | 0.7739 | pathogenic | -1.708 | Destabilizing | 0.38 | N | 0.685 | prob.neutral | None | None | None | None | N |
L/M | 0.1484 | likely_benign | 0.1791 | benign | -0.761 | Destabilizing | 0.38 | N | 0.57 | neutral | None | None | None | None | N |
L/N | 0.559 | ambiguous | 0.685 | pathogenic | -1.763 | Destabilizing | 0.38 | N | 0.732 | prob.delet. | None | None | None | None | N |
L/P | 0.0921 | likely_benign | 0.1123 | benign | -1.42 | Destabilizing | None | N | 0.556 | neutral | None | None | None | None | N |
L/Q | 0.4636 | ambiguous | 0.533 | ambiguous | -1.746 | Destabilizing | 0.555 | D | 0.654 | neutral | None | None | None | None | N |
L/R | 0.6249 | likely_pathogenic | 0.7004 | pathogenic | -1.295 | Destabilizing | 0.317 | N | 0.684 | prob.neutral | None | None | None | None | N |
L/S | 0.3743 | ambiguous | 0.4657 | ambiguous | -2.495 | Highly Destabilizing | 0.081 | N | 0.65 | neutral | None | None | None | None | N |
L/T | 0.1996 | likely_benign | 0.2411 | benign | -2.208 | Highly Destabilizing | 0.001 | N | 0.479 | neutral | None | None | None | None | N |
L/V | 0.0923 | likely_benign | 0.0928 | benign | -1.42 | Destabilizing | None | N | 0.435 | neutral | None | None | None | None | N |
L/W | 0.7063 | likely_pathogenic | 0.7535 | pathogenic | -1.685 | Destabilizing | 0.935 | D | 0.67 | neutral | None | None | None | None | N |
L/Y | 0.7477 | likely_pathogenic | 0.8156 | pathogenic | -1.434 | Destabilizing | 0.555 | D | 0.671 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.