Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 9549 | 28870;28871;28872 | chr2:178709674;178709673;178709672 | chr2:179574401;179574400;179574399 |
N2AB | 9232 | 27919;27920;27921 | chr2:178709674;178709673;178709672 | chr2:179574401;179574400;179574399 |
N2A | 8305 | 25138;25139;25140 | chr2:178709674;178709673;178709672 | chr2:179574401;179574400;179574399 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/S | rs763448983 | -2.729 | 0.193 | None | 0.757 | 0.27 | 0.557286757043 | gnomAD-2.1.1 | 4.01E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.85E-06 | 0 |
L/S | rs763448983 | -2.729 | 0.193 | None | 0.757 | 0.27 | 0.557286757043 | gnomAD-4.0.0 | 1.59108E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85801E-06 | 0 | 0 |
L/V | None | None | 0.001 | None | 0.438 | 0.093 | 0.0920862733494 | gnomAD-4.0.0 | 4.80129E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.25001E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.3593 | ambiguous | 0.3882 | ambiguous | -2.501 | Highly Destabilizing | 0.004 | N | 0.517 | neutral | None | None | None | None | N |
L/C | 0.6741 | likely_pathogenic | 0.7024 | pathogenic | -1.688 | Destabilizing | 0.981 | D | 0.738 | prob.delet. | None | None | None | None | N |
L/D | 0.9933 | likely_pathogenic | 0.9942 | pathogenic | -2.945 | Highly Destabilizing | 0.818 | D | 0.809 | deleterious | None | None | None | None | N |
L/E | 0.9684 | likely_pathogenic | 0.9678 | pathogenic | -2.629 | Highly Destabilizing | 0.818 | D | 0.806 | deleterious | None | None | None | None | N |
L/F | 0.3651 | ambiguous | 0.3865 | ambiguous | -1.463 | Destabilizing | 0.627 | D | 0.757 | deleterious | None | None | None | None | N |
L/G | 0.8977 | likely_pathogenic | 0.9161 | pathogenic | -3.127 | Highly Destabilizing | 0.241 | N | 0.775 | deleterious | None | None | None | None | N |
L/H | 0.8908 | likely_pathogenic | 0.8861 | pathogenic | -2.742 | Highly Destabilizing | 0.981 | D | 0.764 | deleterious | None | None | None | None | N |
L/I | 0.0786 | likely_benign | 0.0797 | benign | -0.641 | Destabilizing | 0.001 | N | 0.41 | neutral | None | None | None | None | N |
L/K | 0.9727 | likely_pathogenic | 0.9733 | pathogenic | -1.79 | Destabilizing | 0.69 | D | 0.789 | deleterious | None | None | None | None | N |
L/M | 0.1552 | likely_benign | 0.154 | benign | -0.719 | Destabilizing | 0.69 | D | 0.727 | prob.delet. | None | None | None | None | N |
L/N | 0.9431 | likely_pathogenic | 0.9477 | pathogenic | -2.409 | Highly Destabilizing | 0.932 | D | 0.813 | deleterious | None | None | None | None | N |
L/P | 0.963 | likely_pathogenic | 0.9688 | pathogenic | -1.248 | Destabilizing | 0.818 | D | 0.812 | deleterious | None | None | None | None | N |
L/Q | 0.8887 | likely_pathogenic | 0.8787 | pathogenic | -2.087 | Highly Destabilizing | 0.932 | D | 0.788 | deleterious | None | None | None | None | N |
L/R | 0.9378 | likely_pathogenic | 0.9388 | pathogenic | -1.837 | Destabilizing | 0.818 | D | 0.792 | deleterious | None | None | None | None | N |
L/S | 0.7561 | likely_pathogenic | 0.7838 | pathogenic | -3.082 | Highly Destabilizing | 0.193 | N | 0.757 | deleterious | None | None | None | None | N |
L/T | 0.4844 | ambiguous | 0.4996 | ambiguous | -2.592 | Highly Destabilizing | 0.388 | N | 0.76 | deleterious | None | None | None | None | N |
L/V | 0.0758 | likely_benign | 0.0734 | benign | -1.248 | Destabilizing | 0.001 | N | 0.438 | neutral | None | None | None | None | N |
L/W | 0.8663 | likely_pathogenic | 0.8649 | pathogenic | -1.874 | Destabilizing | 0.981 | D | 0.753 | deleterious | None | None | None | None | N |
L/Y | 0.8693 | likely_pathogenic | 0.8833 | pathogenic | -1.577 | Destabilizing | 0.818 | D | 0.798 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.