Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 9635 | 29128;29129;29130 | chr2:178707664;178707663;178707662 | chr2:179572391;179572390;179572389 |
N2AB | 9318 | 28177;28178;28179 | chr2:178707664;178707663;178707662 | chr2:179572391;179572390;179572389 |
N2A | 8391 | 25396;25397;25398 | chr2:178707664;178707663;178707662 | chr2:179572391;179572390;179572389 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | rs397517531 | None | 0.024 | None | 0.287 | 0.199 | 0.310458034454 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.86E-06 | 0 |
R/G | rs397517531 | None | 0.024 | None | 0.287 | 0.199 | 0.310458034454 | gnomAD-4.0.0 | 3.42088E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.79882E-06 | 2.31884E-05 | 1.65645E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.3156 | likely_benign | 0.2277 | benign | -0.374 | Destabilizing | 0.016 | N | 0.281 | neutral | None | None | None | None | N |
R/C | 0.2479 | likely_benign | 0.1834 | benign | -0.216 | Destabilizing | 0.864 | D | 0.346 | neutral | None | None | None | None | N |
R/D | 0.5518 | ambiguous | 0.4769 | ambiguous | 0.066 | Stabilizing | 0.038 | N | 0.332 | neutral | None | None | None | None | N |
R/E | 0.3993 | ambiguous | 0.2968 | benign | 0.158 | Stabilizing | 0.016 | N | 0.279 | neutral | None | None | None | None | N |
R/F | 0.5398 | ambiguous | 0.4321 | ambiguous | -0.407 | Destabilizing | 0.356 | N | 0.379 | neutral | None | None | None | None | N |
R/G | 0.1689 | likely_benign | 0.1307 | benign | -0.645 | Destabilizing | 0.024 | N | 0.287 | neutral | None | None | None | None | N |
R/H | 0.0949 | likely_benign | 0.0951 | benign | -1.11 | Destabilizing | 0.356 | N | 0.329 | neutral | None | None | None | None | N |
R/I | 0.27 | likely_benign | 0.2004 | benign | 0.33 | Stabilizing | 0.171 | N | 0.438 | neutral | None | None | None | None | N |
R/K | 0.0976 | likely_benign | 0.0801 | benign | -0.327 | Destabilizing | None | N | 0.099 | neutral | None | None | None | None | N |
R/L | 0.2388 | likely_benign | 0.1901 | benign | 0.33 | Stabilizing | 0.038 | N | 0.327 | neutral | None | None | None | None | N |
R/M | 0.2937 | likely_benign | 0.2117 | benign | 0.055 | Stabilizing | 0.628 | D | 0.367 | neutral | None | None | None | None | N |
R/N | 0.4147 | ambiguous | 0.3481 | ambiguous | 0.216 | Stabilizing | None | N | 0.123 | neutral | None | None | None | None | N |
R/P | 0.7184 | likely_pathogenic | 0.5811 | pathogenic | 0.117 | Stabilizing | 0.136 | N | 0.409 | neutral | None | None | None | None | N |
R/Q | 0.1052 | likely_benign | 0.0942 | benign | 0.016 | Stabilizing | 0.038 | N | 0.258 | neutral | None | None | None | None | N |
R/S | 0.335 | likely_benign | 0.2602 | benign | -0.406 | Destabilizing | 0.001 | N | 0.215 | neutral | None | None | None | None | N |
R/T | 0.1788 | likely_benign | 0.141 | benign | -0.152 | Destabilizing | 0.001 | N | 0.225 | neutral | None | None | None | None | N |
R/V | 0.3733 | ambiguous | 0.277 | benign | 0.117 | Stabilizing | 0.038 | N | 0.394 | neutral | None | None | None | None | N |
R/W | 0.2435 | likely_benign | 0.1869 | benign | -0.218 | Destabilizing | 0.864 | D | 0.391 | neutral | None | None | None | None | N |
R/Y | 0.4177 | ambiguous | 0.344 | ambiguous | 0.136 | Stabilizing | 0.628 | D | 0.355 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.