Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 1001 | 3226;3227;3228 | chr2:178782905;178782904;178782903 | chr2:179647632;179647631;179647630 |
N2AB | 1001 | 3226;3227;3228 | chr2:178782905;178782904;178782903 | chr2:179647632;179647631;179647630 |
N2A | 1001 | 3226;3227;3228 | chr2:178782905;178782904;178782903 | chr2:179647632;179647631;179647630 |
N2B | 955 | 3088;3089;3090 | chr2:178782905;178782904;178782903 | chr2:179647632;179647631;179647630 |
Novex-1 | 955 | 3088;3089;3090 | chr2:178782905;178782904;178782903 | chr2:179647632;179647631;179647630 |
Novex-2 | 955 | 3088;3089;3090 | chr2:178782905;178782904;178782903 | chr2:179647632;179647631;179647630 |
Novex-3 | 1001 | 3226;3227;3228 | chr2:178782905;178782904;178782903 | chr2:179647632;179647631;179647630 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M/I | rs794729522 | None | None | N | 0.168 | 0.143 | 0.292787519742 | gnomAD-4.0.0 | 6.36231E-06 | None | None | None | None | N | None | 0 | 0 | None | 9.53107E-05 | 5.54785E-05 | None | 0 | 0 | 0 | 0 | 0 |
M/R | rs148269839 | -0.568 | 0.065 | N | 0.523 | 0.378 | None | gnomAD-2.1.1 | 1.13354E-04 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 3.98E-05 | 2.25334E-04 | 2.77393E-04 |
M/R | rs148269839 | -0.568 | 0.065 | N | 0.523 | 0.378 | None | gnomAD-3.1.2 | 1.18247E-04 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.64535E-04 | 0 | 0 |
M/R | rs148269839 | -0.568 | 0.065 | N | 0.523 | 0.378 | None | gnomAD-4.0.0 | 1.44358E-04 | None | None | None | None | N | None | 0 | 1.66644E-05 | None | 0 | 0 | None | 0 | 0 | 1.93218E-04 | 0 | 6.40184E-05 |
M/T | rs148269839 | -1.37 | None | N | 0.219 | 0.348 | 0.677378689129 | gnomAD-2.1.1 | 8.86E-05 | None | None | None | None | N | None | 0 | 1.69338E-04 | None | 0 | 0 | None | 0 | None | 6.76698E-04 | 7.77E-06 | 1.38696E-04 |
M/T | rs148269839 | -1.37 | None | N | 0.219 | 0.348 | 0.677378689129 | gnomAD-3.1.2 | 5.91E-05 | None | None | None | None | N | None | 0 | 1.30839E-04 | 0 | 0 | 0 | None | 4.70544E-04 | 0 | 1.47E-05 | 0 | 4.78011E-04 |
M/T | rs148269839 | -1.37 | None | N | 0.219 | 0.348 | 0.677378689129 | gnomAD-4.0.0 | 3.71737E-05 | None | None | None | None | N | None | 0 | 1.4998E-04 | None | 0 | 0 | None | 6.40205E-04 | 0 | 7.62702E-06 | 0 | 1.60046E-05 |
M/V | None | None | None | N | 0.162 | 0.103 | 0.148003135375 | gnomAD-4.0.0 | 1.20032E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 6.07533E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
M/A | 0.6373 | likely_pathogenic | 0.6193 | pathogenic | -1.59 | Destabilizing | 0.004 | N | 0.309 | neutral | None | None | None | None | N |
M/C | 0.8942 | likely_pathogenic | 0.8951 | pathogenic | -1.699 | Destabilizing | 0.497 | N | 0.468 | neutral | None | None | None | None | N |
M/D | 0.94 | likely_pathogenic | 0.9311 | pathogenic | -0.707 | Destabilizing | 0.085 | N | 0.528 | neutral | None | None | None | None | N |
M/E | 0.6473 | likely_pathogenic | 0.6283 | pathogenic | -0.623 | Destabilizing | 0.085 | N | 0.495 | neutral | None | None | None | None | N |
M/F | 0.6156 | likely_pathogenic | 0.5918 | pathogenic | -0.442 | Destabilizing | 0.022 | N | 0.415 | neutral | None | None | None | None | N |
M/G | 0.8791 | likely_pathogenic | 0.8673 | pathogenic | -1.96 | Destabilizing | 0.037 | N | 0.477 | neutral | None | None | None | None | N |
M/H | 0.6369 | likely_pathogenic | 0.6201 | pathogenic | -1.203 | Destabilizing | 0.497 | N | 0.502 | neutral | None | None | None | None | N |
M/I | 0.5021 | ambiguous | 0.4648 | ambiguous | -0.611 | Destabilizing | None | N | 0.168 | neutral | N | 0.346134392 | None | None | N |
M/K | 0.315 | likely_benign | 0.3119 | benign | -0.603 | Destabilizing | 0.028 | N | 0.469 | neutral | N | 0.407202419 | None | None | N |
M/L | 0.1542 | likely_benign | 0.149 | benign | -0.611 | Destabilizing | None | N | 0.173 | neutral | N | 0.334550611 | None | None | N |
M/N | 0.6918 | likely_pathogenic | 0.6537 | pathogenic | -0.596 | Destabilizing | 0.085 | N | 0.54 | neutral | None | None | None | None | N |
M/P | 0.9973 | likely_pathogenic | 0.9971 | pathogenic | -0.91 | Destabilizing | 0.22 | N | 0.539 | neutral | None | None | None | None | N |
M/Q | 0.3162 | likely_benign | 0.3044 | benign | -0.577 | Destabilizing | 0.22 | N | 0.435 | neutral | None | None | None | None | N |
M/R | 0.3789 | ambiguous | 0.3789 | ambiguous | -0.35 | Destabilizing | 0.065 | N | 0.523 | neutral | N | 0.389882439 | None | None | N |
M/S | 0.6317 | likely_pathogenic | 0.5963 | pathogenic | -1.251 | Destabilizing | 0.009 | N | 0.405 | neutral | None | None | None | None | N |
M/T | 0.3053 | likely_benign | 0.2823 | benign | -1.046 | Destabilizing | None | N | 0.219 | neutral | N | 0.32480407 | None | None | N |
M/V | 0.1274 | likely_benign | 0.1172 | benign | -0.91 | Destabilizing | None | N | 0.162 | neutral | N | 0.338115172 | None | None | N |
M/W | 0.8418 | likely_pathogenic | 0.8434 | pathogenic | -0.492 | Destabilizing | 0.788 | D | 0.465 | neutral | None | None | None | None | N |
M/Y | 0.8252 | likely_pathogenic | 0.8139 | pathogenic | -0.449 | Destabilizing | 0.085 | N | 0.523 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.