Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 1303 | 4132;4133;4134 | chr2:178779285;178779284;178779283 | chr2:179644012;179644011;179644010 |
N2AB | 1303 | 4132;4133;4134 | chr2:178779285;178779284;178779283 | chr2:179644012;179644011;179644010 |
N2A | 1303 | 4132;4133;4134 | chr2:178779285;178779284;178779283 | chr2:179644012;179644011;179644010 |
N2B | 1257 | 3994;3995;3996 | chr2:178779285;178779284;178779283 | chr2:179644012;179644011;179644010 |
Novex-1 | 1257 | 3994;3995;3996 | chr2:178779285;178779284;178779283 | chr2:179644012;179644011;179644010 |
Novex-2 | 1257 | 3994;3995;3996 | chr2:178779285;178779284;178779283 | chr2:179644012;179644011;179644010 |
Novex-3 | 1303 | 4132;4133;4134 | chr2:178779285;178779284;178779283 | chr2:179644012;179644011;179644010 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/I | None | None | 0.033 | N | 0.405 | 0.054 | 0.421920138742 | gnomAD-4.0.0 | 1.36846E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 1.73491E-04 | 0 | 0 | 1.65612E-05 |
L/P | rs1407839718 | -0.327 | 0.912 | N | 0.483 | 0.576 | 0.813802140646 | gnomAD-2.1.1 | 4E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 5.45E-05 | None | 0 | None | 0 | 0 | 0 |
L/P | rs1407839718 | -0.327 | 0.912 | N | 0.483 | 0.576 | 0.813802140646 | gnomAD-4.0.0 | 1.36846E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 5.04414E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.2355 | likely_benign | 0.2732 | benign | -0.894 | Destabilizing | 0.241 | N | 0.415 | neutral | None | None | None | None | I |
L/C | 0.7057 | likely_pathogenic | 0.7334 | pathogenic | -0.672 | Destabilizing | 0.944 | D | 0.439 | neutral | None | None | None | None | I |
L/D | 0.7986 | likely_pathogenic | 0.85 | pathogenic | -0.397 | Destabilizing | 0.818 | D | 0.482 | neutral | None | None | None | None | I |
L/E | 0.4503 | ambiguous | 0.5206 | ambiguous | -0.454 | Destabilizing | 0.818 | D | 0.495 | neutral | None | None | None | None | I |
L/F | 0.1626 | likely_benign | 0.1935 | benign | -0.672 | Destabilizing | 0.001 | N | 0.289 | neutral | N | 0.490476701 | None | None | I |
L/G | 0.5676 | likely_pathogenic | 0.6405 | pathogenic | -1.117 | Destabilizing | 0.818 | D | 0.481 | neutral | None | None | None | None | I |
L/H | 0.3077 | likely_benign | 0.3757 | ambiguous | -0.294 | Destabilizing | 0.975 | D | 0.479 | neutral | N | 0.510569004 | None | None | I |
L/I | 0.1186 | likely_benign | 0.1321 | benign | -0.406 | Destabilizing | 0.033 | N | 0.405 | neutral | N | 0.474196928 | None | None | I |
L/K | 0.3072 | likely_benign | 0.3605 | ambiguous | -0.591 | Destabilizing | 0.818 | D | 0.483 | neutral | None | None | None | None | I |
L/M | 0.1151 | likely_benign | 0.1274 | benign | -0.446 | Destabilizing | 0.024 | N | 0.284 | neutral | None | None | None | None | I |
L/N | 0.4968 | ambiguous | 0.5811 | pathogenic | -0.401 | Destabilizing | 0.932 | D | 0.483 | neutral | None | None | None | None | I |
L/P | 0.3275 | likely_benign | 0.4065 | ambiguous | -0.536 | Destabilizing | 0.912 | D | 0.483 | neutral | N | 0.485538884 | None | None | I |
L/Q | 0.1681 | likely_benign | 0.2064 | benign | -0.604 | Destabilizing | 0.818 | D | 0.488 | neutral | None | None | None | None | I |
L/R | 0.2134 | likely_benign | 0.2552 | benign | 0.001 | Stabilizing | 0.773 | D | 0.493 | neutral | N | 0.482197364 | None | None | I |
L/S | 0.2959 | likely_benign | 0.3526 | ambiguous | -0.895 | Destabilizing | 0.69 | D | 0.478 | neutral | None | None | None | None | I |
L/T | 0.2049 | likely_benign | 0.2469 | benign | -0.84 | Destabilizing | 0.388 | N | 0.454 | neutral | None | None | None | None | I |
L/V | 0.1077 | likely_benign | 0.1242 | benign | -0.536 | Destabilizing | 0.001 | N | 0.263 | neutral | N | 0.421744186 | None | None | I |
L/W | 0.3101 | likely_benign | 0.3775 | ambiguous | -0.698 | Destabilizing | 0.981 | D | 0.497 | neutral | None | None | None | None | I |
L/Y | 0.4449 | ambiguous | 0.5237 | ambiguous | -0.47 | Destabilizing | 0.527 | D | 0.431 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.