Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14108 | 42547;42548;42549 | chr2:178634459;178634458;178634457 | chr2:179499186;179499185;179499184 |
N2AB | 12467 | 37624;37625;37626 | chr2:178634459;178634458;178634457 | chr2:179499186;179499185;179499184 |
N2A | 11540 | 34843;34844;34845 | chr2:178634459;178634458;178634457 | chr2:179499186;179499185;179499184 |
N2B | 5043 | 15352;15353;15354 | chr2:178634459;178634458;178634457 | chr2:179499186;179499185;179499184 |
Novex-1 | 5168 | 15727;15728;15729 | chr2:178634459;178634458;178634457 | chr2:179499186;179499185;179499184 |
Novex-2 | 5235 | 15928;15929;15930 | chr2:178634459;178634458;178634457 | chr2:179499186;179499185;179499184 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/F | rs772414514 | -1.698 | 0.627 | N | 0.645 | 0.226 | 0.576639666579 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 9.81E-05 | None | 0 | 0 | 0 |
I/F | rs772414514 | -1.698 | 0.627 | N | 0.645 | 0.226 | 0.576639666579 | gnomAD-4.0.0 | 6.15989E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.04367E-04 | 0 |
I/N | None | None | 0.773 | N | 0.679 | 0.341 | 0.769439331453 | gnomAD-4.0.0 | 6.84434E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99675E-07 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.8761 | likely_pathogenic | 0.7862 | pathogenic | -3.012 | Highly Destabilizing | 0.116 | N | 0.571 | neutral | None | None | None | None | N |
I/C | 0.9182 | likely_pathogenic | 0.8851 | pathogenic | -2.171 | Highly Destabilizing | 0.981 | D | 0.646 | neutral | None | None | None | None | N |
I/D | 0.9865 | likely_pathogenic | 0.9672 | pathogenic | -3.619 | Highly Destabilizing | 0.818 | D | 0.679 | prob.neutral | None | None | None | None | N |
I/E | 0.9541 | likely_pathogenic | 0.8966 | pathogenic | -3.383 | Highly Destabilizing | 0.818 | D | 0.68 | prob.neutral | None | None | None | None | N |
I/F | 0.4094 | ambiguous | 0.3191 | benign | -1.779 | Destabilizing | 0.627 | D | 0.645 | neutral | N | 0.503649496 | None | None | N |
I/G | 0.9725 | likely_pathogenic | 0.9484 | pathogenic | -3.511 | Highly Destabilizing | 0.001 | N | 0.53 | neutral | None | None | None | None | N |
I/H | 0.8882 | likely_pathogenic | 0.8162 | pathogenic | -2.99 | Highly Destabilizing | 0.981 | D | 0.693 | prob.neutral | None | None | None | None | N |
I/K | 0.9046 | likely_pathogenic | 0.8136 | pathogenic | -2.437 | Highly Destabilizing | 0.388 | N | 0.677 | prob.neutral | None | None | None | None | N |
I/L | 0.295 | likely_benign | 0.2288 | benign | -1.524 | Destabilizing | 0.015 | N | 0.435 | neutral | D | 0.524870568 | None | None | N |
I/M | 0.2054 | likely_benign | 0.1539 | benign | -1.491 | Destabilizing | 0.006 | N | 0.287 | neutral | N | 0.489233319 | None | None | N |
I/N | 0.8458 | likely_pathogenic | 0.7336 | pathogenic | -2.849 | Highly Destabilizing | 0.773 | D | 0.679 | prob.neutral | N | 0.50896261 | None | None | N |
I/P | 0.9985 | likely_pathogenic | 0.9976 | pathogenic | -2.01 | Highly Destabilizing | 0.932 | D | 0.682 | prob.neutral | None | None | None | None | N |
I/Q | 0.8714 | likely_pathogenic | 0.7841 | pathogenic | -2.679 | Highly Destabilizing | 0.818 | D | 0.687 | prob.neutral | None | None | None | None | N |
I/R | 0.8383 | likely_pathogenic | 0.7213 | pathogenic | -2.082 | Highly Destabilizing | 0.69 | D | 0.681 | prob.neutral | None | None | None | None | N |
I/S | 0.7989 | likely_pathogenic | 0.6538 | pathogenic | -3.418 | Highly Destabilizing | 0.324 | N | 0.634 | neutral | N | 0.452208778 | None | None | N |
I/T | 0.738 | likely_pathogenic | 0.5625 | ambiguous | -3.066 | Highly Destabilizing | 0.324 | N | 0.636 | neutral | N | 0.465788835 | None | None | N |
I/V | 0.178 | likely_benign | 0.1553 | benign | -2.01 | Highly Destabilizing | 0.041 | N | 0.417 | neutral | N | 0.502171233 | None | None | N |
I/W | 0.9418 | likely_pathogenic | 0.9151 | pathogenic | -2.257 | Highly Destabilizing | 0.981 | D | 0.702 | prob.neutral | None | None | None | None | N |
I/Y | 0.7466 | likely_pathogenic | 0.684 | pathogenic | -2.081 | Highly Destabilizing | 0.818 | D | 0.67 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.