Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14300 | 43123;43124;43125 | chr2:178633461;178633460;178633459 | chr2:179498188;179498187;179498186 |
N2AB | 12659 | 38200;38201;38202 | chr2:178633461;178633460;178633459 | chr2:179498188;179498187;179498186 |
N2A | 11732 | 35419;35420;35421 | chr2:178633461;178633460;178633459 | chr2:179498188;179498187;179498186 |
N2B | 5235 | 15928;15929;15930 | chr2:178633461;178633460;178633459 | chr2:179498188;179498187;179498186 |
Novex-1 | 5360 | 16303;16304;16305 | chr2:178633461;178633460;178633459 | chr2:179498188;179498187;179498186 |
Novex-2 | 5427 | 16504;16505;16506 | chr2:178633461;178633460;178633459 | chr2:179498188;179498187;179498186 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/L | rs757079194 | -0.128 | 0.004 | N | 0.459 | 0.034 | 0.115124310173 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.88E-06 | 0 |
V/L | rs757079194 | -0.128 | 0.004 | N | 0.459 | 0.034 | 0.115124310173 | gnomAD-4.0.0 | 1.59229E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.85971E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1409 | likely_benign | 0.1184 | benign | -1.91 | Destabilizing | 0.012 | N | 0.421 | neutral | N | 0.449184211 | None | None | N |
V/C | 0.62 | likely_pathogenic | 0.578 | pathogenic | -1.069 | Destabilizing | 0.676 | D | 0.695 | prob.neutral | None | None | None | None | N |
V/D | 0.3252 | likely_benign | 0.2516 | benign | -2.757 | Highly Destabilizing | 0.038 | N | 0.715 | prob.delet. | None | None | None | None | N |
V/E | 0.1549 | likely_benign | 0.1283 | benign | -2.457 | Highly Destabilizing | None | N | 0.492 | neutral | N | 0.433753689 | None | None | N |
V/F | 0.1595 | likely_benign | 0.1255 | benign | -0.995 | Destabilizing | 0.214 | N | 0.727 | prob.delet. | None | None | None | None | N |
V/G | 0.196 | likely_benign | 0.1746 | benign | -2.485 | Highly Destabilizing | 0.029 | N | 0.703 | prob.neutral | N | 0.444681483 | None | None | N |
V/H | 0.4148 | ambiguous | 0.3823 | ambiguous | -2.48 | Highly Destabilizing | 0.356 | N | 0.721 | prob.delet. | None | None | None | None | N |
V/I | 0.0762 | likely_benign | 0.0677 | benign | -0.247 | Destabilizing | 0.016 | N | 0.539 | neutral | None | None | None | None | N |
V/K | 0.2857 | likely_benign | 0.2481 | benign | -1.285 | Destabilizing | 0.038 | N | 0.694 | prob.neutral | None | None | None | None | N |
V/L | 0.139 | likely_benign | 0.115 | benign | -0.247 | Destabilizing | 0.004 | N | 0.459 | neutral | N | 0.449168909 | None | None | N |
V/M | 0.0823 | likely_benign | 0.0699 | benign | -0.437 | Destabilizing | 0.002 | N | 0.42 | neutral | N | 0.451639458 | None | None | N |
V/N | 0.2215 | likely_benign | 0.1696 | benign | -1.887 | Destabilizing | 0.038 | N | 0.732 | prob.delet. | None | None | None | None | N |
V/P | 0.9653 | likely_pathogenic | 0.9585 | pathogenic | -0.782 | Destabilizing | 0.356 | N | 0.725 | prob.delet. | None | None | None | None | N |
V/Q | 0.1862 | likely_benign | 0.1677 | benign | -1.545 | Destabilizing | 0.038 | N | 0.716 | prob.delet. | None | None | None | None | N |
V/R | 0.2571 | likely_benign | 0.2417 | benign | -1.476 | Destabilizing | 0.214 | N | 0.748 | deleterious | None | None | None | None | N |
V/S | 0.1318 | likely_benign | 0.1083 | benign | -2.36 | Highly Destabilizing | None | N | 0.501 | neutral | None | None | None | None | N |
V/T | 0.106 | likely_benign | 0.0819 | benign | -1.914 | Destabilizing | None | N | 0.242 | neutral | None | None | None | None | N |
V/W | 0.6819 | likely_pathogenic | 0.6329 | pathogenic | -1.602 | Destabilizing | 0.864 | D | 0.737 | prob.delet. | None | None | None | None | N |
V/Y | 0.4496 | ambiguous | 0.3773 | ambiguous | -1.218 | Destabilizing | 0.356 | N | 0.731 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.