Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14340 | 43243;43244;43245 | chr2:178633255;178633254;178633253 | chr2:179497982;179497981;179497980 |
N2AB | 12699 | 38320;38321;38322 | chr2:178633255;178633254;178633253 | chr2:179497982;179497981;179497980 |
N2A | 11772 | 35539;35540;35541 | chr2:178633255;178633254;178633253 | chr2:179497982;179497981;179497980 |
N2B | 5275 | 16048;16049;16050 | chr2:178633255;178633254;178633253 | chr2:179497982;179497981;179497980 |
Novex-1 | 5400 | 16423;16424;16425 | chr2:178633255;178633254;178633253 | chr2:179497982;179497981;179497980 |
Novex-2 | 5467 | 16624;16625;16626 | chr2:178633255;178633254;178633253 | chr2:179497982;179497981;179497980 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/T | rs397517571 | -3.424 | 0.682 | N | 0.837 | 0.354 | 0.333651784274 | gnomAD-2.1.1 | 1.21E-05 | None | None | None | None | N | None | 6.46E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.9E-06 | 1.66389E-04 |
I/T | rs397517571 | -3.424 | 0.682 | N | 0.837 | 0.354 | 0.333651784274 | gnomAD-3.1.2 | 4.6E-05 | None | None | None | None | N | None | 0 | 3.92979E-04 | 0 | 2.88351E-04 | 0 | None | 0 | 0 | 0 | 0 | 0 |
I/T | rs397517571 | -3.424 | 0.682 | N | 0.837 | 0.354 | 0.333651784274 | gnomAD-4.0.0 | 1.36363E-05 | None | None | None | None | N | None | 2.66681E-05 | 1.0001E-04 | None | 3.37998E-05 | 0 | None | 0 | 0 | 5.08681E-06 | 0 | 1.12086E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.5802 | likely_pathogenic | 0.5878 | pathogenic | -3.182 | Highly Destabilizing | 0.37 | N | 0.758 | deleterious | None | None | None | None | N |
I/C | 0.8716 | likely_pathogenic | 0.8447 | pathogenic | -2.286 | Highly Destabilizing | 0.996 | D | 0.786 | deleterious | None | None | None | None | N |
I/D | 0.9951 | likely_pathogenic | 0.9957 | pathogenic | -3.779 | Highly Destabilizing | 0.984 | D | 0.901 | deleterious | None | None | None | None | N |
I/E | 0.9831 | likely_pathogenic | 0.9863 | pathogenic | -3.48 | Highly Destabilizing | 0.953 | D | 0.862 | deleterious | None | None | None | None | N |
I/F | 0.6506 | likely_pathogenic | 0.7443 | pathogenic | -1.853 | Destabilizing | 0.883 | D | 0.729 | deleterious | N | 0.420734262 | None | None | N |
I/G | 0.9503 | likely_pathogenic | 0.9493 | pathogenic | -3.738 | Highly Destabilizing | 0.953 | D | 0.798 | deleterious | None | None | None | None | N |
I/H | 0.9915 | likely_pathogenic | 0.9936 | pathogenic | -3.218 | Highly Destabilizing | 0.996 | D | 0.862 | deleterious | None | None | None | None | N |
I/K | 0.979 | likely_pathogenic | 0.9842 | pathogenic | -2.528 | Highly Destabilizing | 0.953 | D | 0.865 | deleterious | None | None | None | None | N |
I/L | 0.2742 | likely_benign | 0.2452 | benign | -1.492 | Destabilizing | 0.162 | N | 0.386 | neutral | N | 0.433832381 | None | None | N |
I/M | 0.1662 | likely_benign | 0.1874 | benign | -1.63 | Destabilizing | 0.938 | D | 0.719 | prob.delet. | N | 0.421375605 | None | None | N |
I/N | 0.9316 | likely_pathogenic | 0.9406 | pathogenic | -3.153 | Highly Destabilizing | 0.979 | D | 0.894 | deleterious | N | 0.421655193 | None | None | N |
I/P | 0.9916 | likely_pathogenic | 0.9927 | pathogenic | -2.05 | Highly Destabilizing | 0.984 | D | 0.899 | deleterious | None | None | None | None | N |
I/Q | 0.9785 | likely_pathogenic | 0.9823 | pathogenic | -2.865 | Highly Destabilizing | 0.984 | D | 0.892 | deleterious | None | None | None | None | N |
I/R | 0.9643 | likely_pathogenic | 0.9736 | pathogenic | -2.376 | Highly Destabilizing | 0.953 | D | 0.891 | deleterious | None | None | None | None | N |
I/S | 0.8451 | likely_pathogenic | 0.8624 | pathogenic | -3.693 | Highly Destabilizing | 0.938 | D | 0.795 | deleterious | N | 0.421375605 | None | None | N |
I/T | 0.381 | ambiguous | 0.4866 | ambiguous | -3.256 | Highly Destabilizing | 0.682 | D | 0.837 | deleterious | N | 0.404487185 | None | None | N |
I/V | 0.1122 | likely_benign | 0.1013 | benign | -2.05 | Highly Destabilizing | 0.001 | N | 0.201 | neutral | N | 0.36176044 | None | None | N |
I/W | 0.9903 | likely_pathogenic | 0.9925 | pathogenic | -2.234 | Highly Destabilizing | 0.996 | D | 0.86 | deleterious | None | None | None | None | N |
I/Y | 0.9637 | likely_pathogenic | 0.9733 | pathogenic | -2.121 | Highly Destabilizing | 0.953 | D | 0.856 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.