Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14501 | 43726;43727;43728 | chr2:178632393;178632392;178632391 | chr2:179497120;179497119;179497118 |
N2AB | 12860 | 38803;38804;38805 | chr2:178632393;178632392;178632391 | chr2:179497120;179497119;179497118 |
N2A | 11933 | 36022;36023;36024 | chr2:178632393;178632392;178632391 | chr2:179497120;179497119;179497118 |
N2B | 5436 | 16531;16532;16533 | chr2:178632393;178632392;178632391 | chr2:179497120;179497119;179497118 |
Novex-1 | 5561 | 16906;16907;16908 | chr2:178632393;178632392;178632391 | chr2:179497120;179497119;179497118 |
Novex-2 | 5628 | 17107;17108;17109 | chr2:178632393;178632392;178632391 | chr2:179497120;179497119;179497118 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs764500643 | -0.624 | 0.005 | N | 0.112 | 0.134 | None | gnomAD-2.1.1 | 3.54E-05 | None | None | None | None | N | None | 3.90761E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
T/A | rs764500643 | -0.624 | 0.005 | N | 0.112 | 0.134 | None | gnomAD-3.1.2 | 5.93E-05 | None | None | None | None | N | None | 2.17633E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
T/A | rs764500643 | -0.624 | 0.005 | N | 0.112 | 0.134 | None | gnomAD-4.0.0 | 1.25638E-05 | None | None | None | None | N | None | 2.70205E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
T/I | rs115825044 | 0.197 | 0.934 | N | 0.441 | 0.248 | 0.459642846412 | gnomAD-2.1.1 | 1.78E-05 | None | None | None | None | N | None | 0 | 9.87E-05 | None | 0 | 0 | None | 0 | None | 0 | 9.8E-06 | 0 |
T/I | rs115825044 | 0.197 | 0.934 | N | 0.441 | 0.248 | 0.459642846412 | gnomAD-4.0.0 | 2.08197E-06 | None | None | None | None | N | None | 0 | 4.85555E-05 | None | 0 | 0 | None | 0 | 0 | 9.06645E-07 | 0 | 0 |
T/N | None | -0.324 | 0.891 | N | 0.368 | 0.213 | 0.403328974453 | gnomAD-2.1.1 | 5.08E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 6.19369E-04 | None | 0 | None | 0 | 1.7E-05 | 0 |
T/N | None | -0.324 | 0.891 | N | 0.368 | 0.213 | 0.403328974453 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 1.93648E-04 | None | 0 | 0 | 0 | 0 | 0 |
T/N | None | -0.324 | 0.891 | N | 0.368 | 0.213 | 0.403328974453 | gnomAD-4.0.0 | 1.1928E-05 | None | None | None | None | N | None | 1.34953E-05 | 0 | None | 0 | 2.93507E-04 | None | 0 | 0 | 4.27009E-06 | 0 | 0 |
T/S | rs115825044 | -0.651 | 0.454 | N | 0.373 | 0.211 | 0.156986980423 | gnomAD-2.1.1 | 1.21208E-04 | None | None | None | None | N | None | 1.03645E-03 | 9.61E-05 | None | 0 | 0 | None | 0 | None | 0 | 8.51E-06 | 4.55512E-04 |
T/S | rs115825044 | -0.651 | 0.454 | N | 0.373 | 0.211 | 0.156986980423 | gnomAD-3.1.2 | 4.14626E-04 | None | None | None | None | N | None | 1.23165E-03 | 4.59619E-04 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 9.61538E-04 |
T/S | rs115825044 | -0.651 | 0.454 | N | 0.373 | 0.211 | 0.156986980423 | 1000 genomes | 9.98403E-04 | None | None | None | None | N | None | 3E-03 | 1.4E-03 | None | None | 0 | 0 | None | None | None | 0 | None |
T/S | rs115825044 | -0.651 | 0.454 | N | 0.373 | 0.211 | 0.156986980423 | gnomAD-4.0.0 | 1.04206E-04 | None | None | None | None | N | None | 1.29345E-03 | 2.12615E-04 | None | 0 | 0 | None | 0 | 8.35561E-04 | 3.15989E-05 | 0 | 2.59648E-04 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.1173 | likely_benign | 0.1046 | benign | -0.701 | Destabilizing | 0.005 | N | 0.112 | neutral | N | 0.490259585 | None | None | N |
T/C | 0.6078 | likely_pathogenic | 0.5397 | ambiguous | -0.48 | Destabilizing | 0.998 | D | 0.413 | neutral | None | None | None | None | N |
T/D | 0.4888 | ambiguous | 0.4434 | ambiguous | 0.06 | Stabilizing | 0.915 | D | 0.421 | neutral | None | None | None | None | N |
T/E | 0.2986 | likely_benign | 0.2764 | benign | 0.075 | Stabilizing | 0.842 | D | 0.393 | neutral | None | None | None | None | N |
T/F | 0.2967 | likely_benign | 0.2727 | benign | -0.678 | Destabilizing | 0.991 | D | 0.526 | neutral | None | None | None | None | N |
T/G | 0.4994 | ambiguous | 0.4314 | ambiguous | -0.971 | Destabilizing | 0.728 | D | 0.435 | neutral | None | None | None | None | N |
T/H | 0.2512 | likely_benign | 0.2114 | benign | -1.151 | Destabilizing | 0.991 | D | 0.505 | neutral | None | None | None | None | N |
T/I | 0.1944 | likely_benign | 0.1796 | benign | -0.074 | Destabilizing | 0.934 | D | 0.441 | neutral | N | 0.511629832 | None | None | N |
T/K | 0.1709 | likely_benign | 0.1442 | benign | -0.61 | Destabilizing | 0.029 | N | 0.185 | neutral | None | None | None | None | N |
T/L | 0.1281 | likely_benign | 0.1163 | benign | -0.074 | Destabilizing | 0.842 | D | 0.399 | neutral | None | None | None | None | N |
T/M | 0.1088 | likely_benign | 0.1043 | benign | 0.016 | Stabilizing | 0.991 | D | 0.429 | neutral | None | None | None | None | N |
T/N | 0.1434 | likely_benign | 0.1256 | benign | -0.589 | Destabilizing | 0.891 | D | 0.368 | neutral | N | 0.513236722 | None | None | N |
T/P | 0.4605 | ambiguous | 0.4064 | ambiguous | -0.25 | Destabilizing | 0.966 | D | 0.439 | neutral | N | 0.514823397 | None | None | N |
T/Q | 0.2141 | likely_benign | 0.1877 | benign | -0.694 | Destabilizing | 0.949 | D | 0.443 | neutral | None | None | None | None | N |
T/R | 0.1422 | likely_benign | 0.1222 | benign | -0.41 | Destabilizing | 0.016 | N | 0.24 | neutral | None | None | None | None | N |
T/S | 0.1599 | likely_benign | 0.1372 | benign | -0.897 | Destabilizing | 0.454 | N | 0.373 | neutral | N | 0.411580873 | None | None | N |
T/V | 0.1801 | likely_benign | 0.1684 | benign | -0.25 | Destabilizing | 0.728 | D | 0.31 | neutral | None | None | None | None | N |
T/W | 0.7318 | likely_pathogenic | 0.6845 | pathogenic | -0.627 | Destabilizing | 0.998 | D | 0.543 | neutral | None | None | None | None | N |
T/Y | 0.3282 | likely_benign | 0.2933 | benign | -0.386 | Destabilizing | 0.991 | D | 0.526 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.