Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14775 | 44548;44549;44550 | chr2:178629402;178629401;178629400 | chr2:179494129;179494128;179494127 |
N2AB | 13134 | 39625;39626;39627 | chr2:178629402;178629401;178629400 | chr2:179494129;179494128;179494127 |
N2A | 12207 | 36844;36845;36846 | chr2:178629402;178629401;178629400 | chr2:179494129;179494128;179494127 |
N2B | 5710 | 17353;17354;17355 | chr2:178629402;178629401;178629400 | chr2:179494129;179494128;179494127 |
Novex-1 | 5835 | 17728;17729;17730 | chr2:178629402;178629401;178629400 | chr2:179494129;179494128;179494127 |
Novex-2 | 5902 | 17929;17930;17931 | chr2:178629402;178629401;178629400 | chr2:179494129;179494128;179494127 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | None | None | 0.999 | N | 0.482 | 0.638 | 0.715797810027 | gnomAD-4.0.0 | 1.59311E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.86179E-06 | 0 | 0 |
V/L | rs540115992 | -0.485 | 0.999 | D | 0.513 | 0.575 | 0.680116873462 | gnomAD-2.1.1 | 2.82E-05 | None | None | None | None | N | None | 0 | 2.03276E-04 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
V/L | rs540115992 | -0.485 | 0.999 | D | 0.513 | 0.575 | 0.680116873462 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 0 | 1.96464E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/L | rs540115992 | -0.485 | 0.999 | D | 0.513 | 0.575 | 0.680116873462 | gnomAD-4.0.0 | 6.82023E-06 | None | None | None | None | N | None | 0 | 1.83462E-04 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/M | rs540115992 | -0.509 | 1.0 | D | 0.73 | 0.633 | 0.731815193843 | gnomAD-2.1.1 | 8.94E-05 | None | None | None | None | N | None | 8.27E-05 | 6.23512E-04 | None | 0 | 0 | None | 0 | None | 0 | 7.82E-06 | 0 |
V/M | rs540115992 | -0.509 | 1.0 | D | 0.73 | 0.633 | 0.731815193843 | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 2.41E-05 | 1.96464E-04 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/M | rs540115992 | -0.509 | 1.0 | D | 0.73 | 0.633 | 0.731815193843 | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 1.5E-03 | 0 | None | None | 0 | 0 | None | None | None | 0 | None |
V/M | rs540115992 | -0.509 | 1.0 | D | 0.73 | 0.633 | 0.731815193843 | gnomAD-4.0.0 | 2.04592E-05 | None | None | None | None | N | None | 1.3338E-05 | 4.66838E-04 | None | 0 | 2.23784E-05 | None | 0 | 0 | 2.54387E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.4804 | ambiguous | 0.4509 | ambiguous | -0.873 | Destabilizing | 0.999 | D | 0.482 | neutral | N | 0.518003372 | None | None | N |
V/C | 0.9259 | likely_pathogenic | 0.921 | pathogenic | -0.759 | Destabilizing | 1.0 | D | 0.636 | neutral | None | None | None | None | N |
V/D | 0.9787 | likely_pathogenic | 0.9801 | pathogenic | -0.433 | Destabilizing | 1.0 | D | 0.684 | prob.neutral | None | None | None | None | N |
V/E | 0.9302 | likely_pathogenic | 0.9311 | pathogenic | -0.514 | Destabilizing | 1.0 | D | 0.649 | neutral | D | 0.701391176 | None | None | N |
V/F | 0.8219 | likely_pathogenic | 0.8511 | pathogenic | -0.893 | Destabilizing | 1.0 | D | 0.689 | prob.neutral | None | None | None | None | N |
V/G | 0.7285 | likely_pathogenic | 0.7411 | pathogenic | -1.072 | Destabilizing | 1.0 | D | 0.673 | neutral | D | 0.701306191 | None | None | N |
V/H | 0.9853 | likely_pathogenic | 0.9849 | pathogenic | -0.623 | Destabilizing | 1.0 | D | 0.646 | neutral | None | None | None | None | N |
V/I | 0.1592 | likely_benign | 0.155 | benign | -0.476 | Destabilizing | 0.998 | D | 0.516 | neutral | None | None | None | None | N |
V/K | 0.9098 | likely_pathogenic | 0.9145 | pathogenic | -0.721 | Destabilizing | 1.0 | D | 0.645 | neutral | None | None | None | None | N |
V/L | 0.656 | likely_pathogenic | 0.6447 | pathogenic | -0.476 | Destabilizing | 0.999 | D | 0.513 | neutral | D | 0.585164987 | None | None | N |
V/M | 0.5571 | ambiguous | 0.5807 | pathogenic | -0.454 | Destabilizing | 1.0 | D | 0.73 | prob.delet. | D | 0.700319646 | None | None | N |
V/N | 0.9445 | likely_pathogenic | 0.9537 | pathogenic | -0.448 | Destabilizing | 1.0 | D | 0.679 | prob.neutral | None | None | None | None | N |
V/P | 0.9901 | likely_pathogenic | 0.9925 | pathogenic | -0.572 | Destabilizing | 1.0 | D | 0.655 | neutral | None | None | None | None | N |
V/Q | 0.9152 | likely_pathogenic | 0.915 | pathogenic | -0.67 | Destabilizing | 1.0 | D | 0.659 | neutral | None | None | None | None | N |
V/R | 0.8937 | likely_pathogenic | 0.8942 | pathogenic | -0.208 | Destabilizing | 1.0 | D | 0.676 | prob.neutral | None | None | None | None | N |
V/S | 0.7846 | likely_pathogenic | 0.7578 | pathogenic | -0.888 | Destabilizing | 1.0 | D | 0.656 | neutral | None | None | None | None | N |
V/T | 0.5625 | ambiguous | 0.5599 | ambiguous | -0.861 | Destabilizing | 0.999 | D | 0.657 | neutral | None | None | None | None | N |
V/W | 0.9976 | likely_pathogenic | 0.9973 | pathogenic | -0.979 | Destabilizing | 1.0 | D | 0.643 | neutral | None | None | None | None | N |
V/Y | 0.982 | likely_pathogenic | 0.9843 | pathogenic | -0.69 | Destabilizing | 1.0 | D | 0.694 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.