Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 14984 | 45175;45176;45177 | chr2:178621972;178621971;178621970 | chr2:179486699;179486698;179486697 |
N2AB | 13343 | 40252;40253;40254 | chr2:178621972;178621971;178621970 | chr2:179486699;179486698;179486697 |
N2A | 12416 | 37471;37472;37473 | chr2:178621972;178621971;178621970 | chr2:179486699;179486698;179486697 |
N2B | 5919 | 17980;17981;17982 | chr2:178621972;178621971;178621970 | chr2:179486699;179486698;179486697 |
Novex-1 | 6044 | 18355;18356;18357 | chr2:178621972;178621971;178621970 | chr2:179486699;179486698;179486697 |
Novex-2 | 6111 | 18556;18557;18558 | chr2:178621972;178621971;178621970 | chr2:179486699;179486698;179486697 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G/C | rs555721876 | -0.37 | 1.0 | N | 0.694 | 0.402 | 0.366848117066 | gnomAD-2.1.1 | 4.08E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.29E-05 | None | 0 | 0 | 0 |
G/C | rs555721876 | -0.37 | 1.0 | N | 0.694 | 0.402 | 0.366848117066 | gnomAD-3.1.2 | 6.59E-06 | None | None | None | None | N | None | 0 | 6.58E-05 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
G/C | rs555721876 | -0.37 | 1.0 | N | 0.694 | 0.402 | 0.366848117066 | gnomAD-4.0.0 | 1.24192E-06 | None | None | None | None | N | None | 0 | 1.67774E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 1.10076E-05 | 0 |
G/D | rs1190798574 | None | 1.0 | N | 0.639 | 0.421 | 0.252162846088 | gnomAD-4.0.0 | 1.59892E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.87028E-06 | 0 | 0 |
G/R | rs555721876 | -0.213 | 1.0 | D | 0.68 | 0.426 | 0.325533332567 | gnomAD-2.1.1 | 3.67E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.13699E-04 | None | 0 | None | 0 | 0 | 0 |
G/R | rs555721876 | -0.213 | 1.0 | D | 0.68 | 0.426 | 0.325533332567 | gnomAD-3.1.2 | 6.59E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.95313E-04 | None | 0 | 0 | 0 | 0 | 0 |
G/R | rs555721876 | -0.213 | 1.0 | D | 0.68 | 0.426 | 0.325533332567 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
G/R | rs555721876 | -0.213 | 1.0 | D | 0.68 | 0.426 | 0.325533332567 | gnomAD-4.0.0 | 9.93463E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.92319E-04 | None | 0 | 0 | 8.48768E-07 | 0 | 3.20914E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G/A | 0.4256 | ambiguous | 0.4666 | ambiguous | -0.323 | Destabilizing | 1.0 | D | 0.553 | neutral | N | 0.460138509 | None | None | N |
G/C | 0.7034 | likely_pathogenic | 0.7443 | pathogenic | -0.758 | Destabilizing | 1.0 | D | 0.694 | prob.neutral | N | 0.508243773 | None | None | N |
G/D | 0.6204 | likely_pathogenic | 0.6697 | pathogenic | -0.744 | Destabilizing | 1.0 | D | 0.639 | neutral | N | 0.450385388 | None | None | N |
G/E | 0.7366 | likely_pathogenic | 0.7633 | pathogenic | -0.885 | Destabilizing | 1.0 | D | 0.676 | prob.neutral | None | None | None | None | N |
G/F | 0.9477 | likely_pathogenic | 0.9556 | pathogenic | -0.966 | Destabilizing | 1.0 | D | 0.679 | prob.neutral | None | None | None | None | N |
G/H | 0.8812 | likely_pathogenic | 0.8925 | pathogenic | -0.691 | Destabilizing | 1.0 | D | 0.657 | neutral | None | None | None | None | N |
G/I | 0.8867 | likely_pathogenic | 0.9023 | pathogenic | -0.349 | Destabilizing | 1.0 | D | 0.685 | prob.neutral | None | None | None | None | N |
G/K | 0.9197 | likely_pathogenic | 0.9328 | pathogenic | -0.977 | Destabilizing | 1.0 | D | 0.679 | prob.neutral | None | None | None | None | N |
G/L | 0.8849 | likely_pathogenic | 0.9077 | pathogenic | -0.349 | Destabilizing | 1.0 | D | 0.7 | prob.neutral | None | None | None | None | N |
G/M | 0.8923 | likely_pathogenic | 0.9053 | pathogenic | -0.422 | Destabilizing | 1.0 | D | 0.688 | prob.neutral | None | None | None | None | N |
G/N | 0.5708 | likely_pathogenic | 0.6191 | pathogenic | -0.544 | Destabilizing | 1.0 | D | 0.637 | neutral | None | None | None | None | N |
G/P | 0.9882 | likely_pathogenic | 0.9901 | pathogenic | -0.305 | Destabilizing | 1.0 | D | 0.681 | prob.neutral | None | None | None | None | N |
G/Q | 0.8304 | likely_pathogenic | 0.8489 | pathogenic | -0.808 | Destabilizing | 1.0 | D | 0.687 | prob.neutral | None | None | None | None | N |
G/R | 0.8801 | likely_pathogenic | 0.8934 | pathogenic | -0.536 | Destabilizing | 1.0 | D | 0.68 | prob.neutral | D | 0.538754232 | None | None | N |
G/S | 0.2064 | likely_benign | 0.2209 | benign | -0.669 | Destabilizing | 1.0 | D | 0.629 | neutral | N | 0.434116094 | None | None | N |
G/T | 0.4617 | ambiguous | 0.4926 | ambiguous | -0.743 | Destabilizing | 1.0 | D | 0.673 | neutral | None | None | None | None | N |
G/V | 0.7662 | likely_pathogenic | 0.794 | pathogenic | -0.305 | Destabilizing | 1.0 | D | 0.694 | prob.neutral | N | 0.515825706 | None | None | N |
G/W | 0.8702 | likely_pathogenic | 0.8826 | pathogenic | -1.186 | Destabilizing | 1.0 | D | 0.668 | neutral | None | None | None | None | N |
G/Y | 0.902 | likely_pathogenic | 0.9163 | pathogenic | -0.819 | Destabilizing | 1.0 | D | 0.678 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.