Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15177 | 45754;45755;45756 | chr2:178621189;178621188;178621187 | chr2:179485916;179485915;179485914 |
N2AB | 13536 | 40831;40832;40833 | chr2:178621189;178621188;178621187 | chr2:179485916;179485915;179485914 |
N2A | 12609 | 38050;38051;38052 | chr2:178621189;178621188;178621187 | chr2:179485916;179485915;179485914 |
N2B | 6112 | 18559;18560;18561 | chr2:178621189;178621188;178621187 | chr2:179485916;179485915;179485914 |
Novex-1 | 6237 | 18934;18935;18936 | chr2:178621189;178621188;178621187 | chr2:179485916;179485915;179485914 |
Novex-2 | 6304 | 19135;19136;19137 | chr2:178621189;178621188;178621187 | chr2:179485916;179485915;179485914 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/L | rs1298913743 | -0.711 | 0.835 | N | 0.496 | 0.227 | 0.53819168318 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 4.65E-05 | 0 | 0 |
V/L | rs1298913743 | -0.711 | 0.835 | N | 0.496 | 0.227 | 0.53819168318 | gnomAD-4.0.0 | 1.59379E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 1.88402E-05 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.3081 | likely_benign | 0.2523 | benign | -2.261 | Highly Destabilizing | 0.91 | D | 0.561 | neutral | D | 0.550384142 | None | None | N |
V/C | 0.8729 | likely_pathogenic | 0.7914 | pathogenic | -1.696 | Destabilizing | 1.0 | D | 0.691 | prob.neutral | None | None | None | None | N |
V/D | 0.8271 | likely_pathogenic | 0.7403 | pathogenic | -2.75 | Highly Destabilizing | 0.994 | D | 0.737 | prob.delet. | D | 0.570198778 | None | None | N |
V/E | 0.5731 | likely_pathogenic | 0.4699 | ambiguous | -2.593 | Highly Destabilizing | 0.996 | D | 0.7 | prob.neutral | None | None | None | None | N |
V/F | 0.3008 | likely_benign | 0.2391 | benign | -1.383 | Destabilizing | 0.989 | D | 0.712 | prob.delet. | D | 0.537134172 | None | None | N |
V/G | 0.6283 | likely_pathogenic | 0.5233 | ambiguous | -2.734 | Highly Destabilizing | 0.994 | D | 0.721 | prob.delet. | D | 0.673853094 | None | None | N |
V/H | 0.7653 | likely_pathogenic | 0.6712 | pathogenic | -2.36 | Highly Destabilizing | 1.0 | D | 0.743 | deleterious | None | None | None | None | N |
V/I | 0.083 | likely_benign | 0.0783 | benign | -0.961 | Destabilizing | 0.248 | N | 0.293 | neutral | N | 0.478825059 | None | None | N |
V/K | 0.6441 | likely_pathogenic | 0.5214 | ambiguous | -2.023 | Highly Destabilizing | 0.996 | D | 0.704 | prob.neutral | None | None | None | None | N |
V/L | 0.2474 | likely_benign | 0.2164 | benign | -0.961 | Destabilizing | 0.835 | D | 0.496 | neutral | N | 0.50912196 | None | None | N |
V/M | 0.2109 | likely_benign | 0.1779 | benign | -0.879 | Destabilizing | 0.996 | D | 0.649 | neutral | None | None | None | None | N |
V/N | 0.6313 | likely_pathogenic | 0.546 | ambiguous | -2.162 | Highly Destabilizing | 0.996 | D | 0.757 | deleterious | None | None | None | None | N |
V/P | 0.9901 | likely_pathogenic | 0.9848 | pathogenic | -1.367 | Destabilizing | 0.999 | D | 0.713 | prob.delet. | None | None | None | None | N |
V/Q | 0.5402 | ambiguous | 0.4474 | ambiguous | -2.112 | Highly Destabilizing | 0.999 | D | 0.717 | prob.delet. | None | None | None | None | N |
V/R | 0.538 | ambiguous | 0.4195 | ambiguous | -1.639 | Destabilizing | 0.996 | D | 0.764 | deleterious | None | None | None | None | N |
V/S | 0.4549 | ambiguous | 0.3665 | ambiguous | -2.748 | Highly Destabilizing | 0.983 | D | 0.683 | prob.neutral | None | None | None | None | N |
V/T | 0.2861 | likely_benign | 0.2236 | benign | -2.472 | Highly Destabilizing | 0.503 | D | 0.459 | neutral | None | None | None | None | N |
V/W | 0.9293 | likely_pathogenic | 0.8688 | pathogenic | -1.842 | Destabilizing | 1.0 | D | 0.707 | prob.neutral | None | None | None | None | N |
V/Y | 0.7581 | likely_pathogenic | 0.6746 | pathogenic | -1.541 | Destabilizing | 0.999 | D | 0.717 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.