Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15737 | 47434;47435;47436 | chr2:178618249;178618248;178618247 | chr2:179482976;179482975;179482974 |
N2AB | 14096 | 42511;42512;42513 | chr2:178618249;178618248;178618247 | chr2:179482976;179482975;179482974 |
N2A | 13169 | 39730;39731;39732 | chr2:178618249;178618248;178618247 | chr2:179482976;179482975;179482974 |
N2B | 6672 | 20239;20240;20241 | chr2:178618249;178618248;178618247 | chr2:179482976;179482975;179482974 |
Novex-1 | 6797 | 20614;20615;20616 | chr2:178618249;178618248;178618247 | chr2:179482976;179482975;179482974 |
Novex-2 | 6864 | 20815;20816;20817 | chr2:178618249;178618248;178618247 | chr2:179482976;179482975;179482974 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/G | rs376440087 | None | 1.0 | N | 0.567 | 0.314 | None | gnomAD-4.0.0 | 1.59313E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.8622E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.7701 | likely_pathogenic | 0.7518 | pathogenic | 0.006 | Stabilizing | 0.999 | D | 0.583 | neutral | None | None | None | None | I |
R/C | 0.7002 | likely_pathogenic | 0.617 | pathogenic | -0.214 | Destabilizing | 1.0 | D | 0.717 | prob.delet. | None | None | None | None | I |
R/D | 0.8933 | likely_pathogenic | 0.8806 | pathogenic | -0.116 | Destabilizing | 1.0 | D | 0.646 | neutral | None | None | None | None | I |
R/E | 0.704 | likely_pathogenic | 0.678 | pathogenic | -0.062 | Destabilizing | 0.999 | D | 0.615 | neutral | None | None | None | None | I |
R/F | 0.9174 | likely_pathogenic | 0.8928 | pathogenic | -0.289 | Destabilizing | 1.0 | D | 0.663 | neutral | None | None | None | None | I |
R/G | 0.7407 | likely_pathogenic | 0.7379 | pathogenic | -0.164 | Destabilizing | 1.0 | D | 0.567 | neutral | N | 0.460445931 | None | None | I |
R/H | 0.3697 | ambiguous | 0.3312 | benign | -0.66 | Destabilizing | 1.0 | D | 0.701 | prob.neutral | None | None | None | None | I |
R/I | 0.6601 | likely_pathogenic | 0.6007 | pathogenic | 0.412 | Stabilizing | 1.0 | D | 0.661 | neutral | N | 0.480305529 | None | None | I |
R/K | 0.3244 | likely_benign | 0.278 | benign | -0.095 | Destabilizing | 0.997 | D | 0.407 | neutral | N | 0.464189806 | None | None | I |
R/L | 0.6278 | likely_pathogenic | 0.6041 | pathogenic | 0.412 | Stabilizing | 1.0 | D | 0.567 | neutral | None | None | None | None | I |
R/M | 0.7427 | likely_pathogenic | 0.6942 | pathogenic | -0.003 | Destabilizing | 1.0 | D | 0.662 | neutral | None | None | None | None | I |
R/N | 0.8639 | likely_pathogenic | 0.8344 | pathogenic | 0.06 | Stabilizing | 1.0 | D | 0.679 | prob.neutral | None | None | None | None | I |
R/P | 0.8992 | likely_pathogenic | 0.8593 | pathogenic | 0.296 | Stabilizing | 1.0 | D | 0.641 | neutral | None | None | None | None | I |
R/Q | 0.2958 | likely_benign | 0.2773 | benign | -0.018 | Destabilizing | 1.0 | D | 0.676 | prob.neutral | None | None | None | None | I |
R/S | 0.8457 | likely_pathogenic | 0.8401 | pathogenic | -0.244 | Destabilizing | 1.0 | D | 0.623 | neutral | N | 0.452975839 | None | None | I |
R/T | 0.6886 | likely_pathogenic | 0.6426 | pathogenic | -0.065 | Destabilizing | 1.0 | D | 0.616 | neutral | N | 0.476474893 | None | None | I |
R/V | 0.7337 | likely_pathogenic | 0.6983 | pathogenic | 0.296 | Stabilizing | 1.0 | D | 0.637 | neutral | None | None | None | None | I |
R/W | 0.6201 | likely_pathogenic | 0.579 | pathogenic | -0.398 | Destabilizing | 1.0 | D | 0.747 | deleterious | None | None | None | None | I |
R/Y | 0.8201 | likely_pathogenic | 0.7869 | pathogenic | 0.024 | Stabilizing | 1.0 | D | 0.675 | prob.neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.