Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 15850 | 47773;47774;47775 | chr2:178617803;178617802;178617801 | chr2:179482530;179482529;179482528 |
N2AB | 14209 | 42850;42851;42852 | chr2:178617803;178617802;178617801 | chr2:179482530;179482529;179482528 |
N2A | 13282 | 40069;40070;40071 | chr2:178617803;178617802;178617801 | chr2:179482530;179482529;179482528 |
N2B | 6785 | 20578;20579;20580 | chr2:178617803;178617802;178617801 | chr2:179482530;179482529;179482528 |
Novex-1 | 6910 | 20953;20954;20955 | chr2:178617803;178617802;178617801 | chr2:179482530;179482529;179482528 |
Novex-2 | 6977 | 21154;21155;21156 | chr2:178617803;178617802;178617801 | chr2:179482530;179482529;179482528 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F/C | rs1462059025 | -0.461 | 0.855 | N | 0.502 | 0.31 | 0.470237251169 | gnomAD-2.1.1 | 5.65E-05 | None | None | None | None | I | None | 0 | 3.77995E-04 | None | 0 | 0 | None | 0 | None | 0 | 0 | 1.66168E-04 |
F/C | rs1462059025 | -0.461 | 0.855 | N | 0.502 | 0.31 | 0.470237251169 | gnomAD-3.1.2 | 1.31662E-04 | None | None | None | None | I | None | 0 | 1.24803E-03 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 4.78927E-04 |
F/C | rs1462059025 | -0.461 | 0.855 | N | 0.502 | 0.31 | 0.470237251169 | gnomAD-4.0.0 | 4.36394E-05 | None | None | None | None | I | None | 0 | 5.60386E-04 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 2.85144E-05 |
F/L | rs113350914 | None | 0.255 | N | 0.242 | 0.179 | 0.104622674875 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 4.64E-05 | 0 | 0 |
F/L | rs113350914 | None | 0.255 | N | 0.242 | 0.179 | 0.104622674875 | gnomAD-4.0.0 | 2.73929E-06 | None | None | None | None | I | None | 8.98957E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.65904E-05 |
F/S | rs1462059025 | -1.153 | 0.146 | N | 0.282 | 0.251 | 0.436025050644 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | I | None | 1.14784E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
F/S | rs1462059025 | -1.153 | 0.146 | N | 0.282 | 0.251 | 0.436025050644 | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 4.83E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
F/S | rs1462059025 | -1.153 | 0.146 | N | 0.282 | 0.251 | 0.436025050644 | gnomAD-4.0.0 | 3.85054E-06 | None | None | None | None | I | None | 5.08337E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
F/V | rs1183898794 | -0.805 | 0.146 | N | 0.254 | 0.147 | 0.394685799254 | gnomAD-2.1.1 | 4.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 5.62E-05 | None | 0 | None | 0 | 0 | 0 |
F/V | rs1183898794 | -0.805 | 0.146 | N | 0.254 | 0.147 | 0.394685799254 | gnomAD-4.0.0 | 1.5944E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 2.78365E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F/A | 0.32 | likely_benign | 0.2437 | benign | -2.274 | Highly Destabilizing | None | N | 0.221 | neutral | None | None | None | None | I |
F/C | 0.2684 | likely_benign | 0.2414 | benign | -1.03 | Destabilizing | 0.855 | D | 0.502 | neutral | N | 0.464347269 | None | None | I |
F/D | 0.7562 | likely_pathogenic | 0.6957 | pathogenic | -0.79 | Destabilizing | 0.691 | D | 0.439 | neutral | None | None | None | None | I |
F/E | 0.8061 | likely_pathogenic | 0.7556 | pathogenic | -0.719 | Destabilizing | 0.312 | N | 0.388 | neutral | None | None | None | None | I |
F/G | 0.6567 | likely_pathogenic | 0.5868 | pathogenic | -2.588 | Highly Destabilizing | 0.185 | N | 0.25 | neutral | None | None | None | None | I |
F/H | 0.4977 | ambiguous | 0.4433 | ambiguous | -0.742 | Destabilizing | 0.96 | D | 0.419 | neutral | None | None | None | None | I |
F/I | 0.2434 | likely_benign | 0.2115 | benign | -1.337 | Destabilizing | 0.454 | N | 0.205 | neutral | N | 0.415199824 | None | None | I |
F/K | 0.8352 | likely_pathogenic | 0.7787 | pathogenic | -1.038 | Destabilizing | 0.524 | D | 0.428 | neutral | None | None | None | None | I |
F/L | 0.7353 | likely_pathogenic | 0.6702 | pathogenic | -1.337 | Destabilizing | 0.255 | N | 0.242 | neutral | N | 0.378756448 | None | None | I |
F/M | 0.4439 | ambiguous | 0.3884 | ambiguous | -0.981 | Destabilizing | 0.96 | D | 0.413 | neutral | None | None | None | None | I |
F/N | 0.4953 | ambiguous | 0.4309 | ambiguous | -0.992 | Destabilizing | 0.691 | D | 0.609 | neutral | None | None | None | None | I |
F/P | 0.6652 | likely_pathogenic | 0.5641 | pathogenic | -1.642 | Destabilizing | None | N | 0.257 | neutral | None | None | None | None | I |
F/Q | 0.7139 | likely_pathogenic | 0.6522 | pathogenic | -1.143 | Destabilizing | 0.887 | D | 0.618 | neutral | None | None | None | None | I |
F/R | 0.708 | likely_pathogenic | 0.6399 | pathogenic | -0.307 | Destabilizing | 0.691 | D | 0.59 | neutral | None | None | None | None | I |
F/S | 0.2823 | likely_benign | 0.228 | benign | -1.839 | Destabilizing | 0.146 | N | 0.282 | neutral | N | 0.397981787 | None | None | I |
F/T | 0.402 | ambiguous | 0.3225 | benign | -1.685 | Destabilizing | 0.312 | N | 0.321 | neutral | None | None | None | None | I |
F/V | 0.205 | likely_benign | 0.1709 | benign | -1.642 | Destabilizing | 0.146 | N | 0.254 | neutral | N | 0.407936242 | None | None | I |
F/W | 0.4779 | ambiguous | 0.4375 | ambiguous | -0.374 | Destabilizing | 0.989 | D | 0.469 | neutral | None | None | None | None | I |
F/Y | 0.1353 | likely_benign | 0.1243 | benign | -0.58 | Destabilizing | 0.837 | D | 0.294 | neutral | N | 0.43437941 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.