Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 16126 | 48601;48602;48603 | chr2:178615725;178615724;178615723 | chr2:179480452;179480451;179480450 |
N2AB | 14485 | 43678;43679;43680 | chr2:178615725;178615724;178615723 | chr2:179480452;179480451;179480450 |
N2A | 13558 | 40897;40898;40899 | chr2:178615725;178615724;178615723 | chr2:179480452;179480451;179480450 |
N2B | 7061 | 21406;21407;21408 | chr2:178615725;178615724;178615723 | chr2:179480452;179480451;179480450 |
Novex-1 | 7186 | 21781;21782;21783 | chr2:178615725;178615724;178615723 | chr2:179480452;179480451;179480450 |
Novex-2 | 7253 | 21982;21983;21984 | chr2:178615725;178615724;178615723 | chr2:179480452;179480451;179480450 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/S | rs764312225 | -2.565 | 0.638 | N | 0.685 | 0.403 | 0.785186314975 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.91E-06 | 0 |
L/S | rs764312225 | -2.565 | 0.638 | N | 0.685 | 0.403 | 0.785186314975 | gnomAD-4.0.0 | 3.18862E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.72908E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.359 | ambiguous | 0.4375 | ambiguous | -2.38 | Highly Destabilizing | 0.25 | N | 0.613 | neutral | None | None | None | None | N |
L/C | 0.434 | ambiguous | 0.4911 | ambiguous | -1.237 | Destabilizing | 0.947 | D | 0.701 | prob.neutral | None | None | None | None | N |
L/D | 0.8757 | likely_pathogenic | 0.9082 | pathogenic | -2.918 | Highly Destabilizing | 0.826 | D | 0.78 | deleterious | None | None | None | None | N |
L/E | 0.5676 | likely_pathogenic | 0.6287 | pathogenic | -2.633 | Highly Destabilizing | 0.826 | D | 0.765 | deleterious | None | None | None | None | N |
L/F | 0.1262 | likely_benign | 0.1447 | benign | -1.364 | Destabilizing | 0.638 | D | 0.659 | neutral | N | 0.465580704 | None | None | N |
L/G | 0.7513 | likely_pathogenic | 0.7905 | pathogenic | -2.938 | Highly Destabilizing | 0.826 | D | 0.733 | prob.delet. | None | None | None | None | N |
L/H | 0.26 | likely_benign | 0.31 | benign | -2.624 | Highly Destabilizing | 0.982 | D | 0.757 | deleterious | None | None | None | None | N |
L/I | 0.0915 | likely_benign | 0.0987 | benign | -0.721 | Destabilizing | 0.002 | N | 0.477 | neutral | N | 0.459820282 | None | None | N |
L/K | 0.4785 | ambiguous | 0.5116 | ambiguous | -1.639 | Destabilizing | 0.826 | D | 0.687 | prob.neutral | None | None | None | None | N |
L/M | 0.1166 | likely_benign | 0.1342 | benign | -0.69 | Destabilizing | 0.7 | D | 0.687 | prob.neutral | None | None | None | None | N |
L/N | 0.5759 | likely_pathogenic | 0.6151 | pathogenic | -2.186 | Highly Destabilizing | 0.935 | D | 0.777 | deleterious | None | None | None | None | N |
L/P | 0.9751 | likely_pathogenic | 0.9798 | pathogenic | -1.262 | Destabilizing | 0.935 | D | 0.781 | deleterious | None | None | None | None | N |
L/Q | 0.2046 | likely_benign | 0.2419 | benign | -1.91 | Destabilizing | 0.935 | D | 0.73 | prob.delet. | None | None | None | None | N |
L/R | 0.3025 | likely_benign | 0.3429 | ambiguous | -1.632 | Destabilizing | 0.826 | D | 0.729 | prob.delet. | None | None | None | None | N |
L/S | 0.3868 | ambiguous | 0.462 | ambiguous | -2.737 | Highly Destabilizing | 0.638 | D | 0.685 | prob.neutral | N | 0.470577966 | None | None | N |
L/T | 0.301 | likely_benign | 0.356 | ambiguous | -2.311 | Highly Destabilizing | 0.539 | D | 0.663 | neutral | None | None | None | None | N |
L/V | 0.0938 | likely_benign | 0.1092 | benign | -1.262 | Destabilizing | 0.002 | N | 0.338 | neutral | N | 0.45133411 | None | None | N |
L/W | 0.3174 | likely_benign | 0.3478 | ambiguous | -1.836 | Destabilizing | 0.982 | D | 0.677 | prob.neutral | None | None | None | None | N |
L/Y | 0.3155 | likely_benign | 0.3444 | ambiguous | -1.528 | Destabilizing | 0.826 | D | 0.703 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.