Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 1618 | 5077;5078;5079 | chr2:178777012;178777011;178777010 | chr2:179641739;179641738;179641737 |
N2AB | 1618 | 5077;5078;5079 | chr2:178777012;178777011;178777010 | chr2:179641739;179641738;179641737 |
N2A | 1618 | 5077;5078;5079 | chr2:178777012;178777011;178777010 | chr2:179641739;179641738;179641737 |
N2B | 1572 | 4939;4940;4941 | chr2:178777012;178777011;178777010 | chr2:179641739;179641738;179641737 |
Novex-1 | 1572 | 4939;4940;4941 | chr2:178777012;178777011;178777010 | chr2:179641739;179641738;179641737 |
Novex-2 | 1572 | 4939;4940;4941 | chr2:178777012;178777011;178777010 | chr2:179641739;179641738;179641737 |
Novex-3 | 1618 | 5077;5078;5079 | chr2:178777012;178777011;178777010 | chr2:179641739;179641738;179641737 |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/G | rs1324756385 | None | 0.521 | N | 0.341 | 0.288 | 0.259761712551 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
D/G | rs1324756385 | None | 0.521 | N | 0.341 | 0.288 | 0.259761712551 | gnomAD-4.0.0 | 2.02977E-06 | None | None | None | None | N | None | 3.49394E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
D/H | None | None | 0.975 | N | 0.401 | 0.209 | 0.3085936734 | gnomAD-4.0.0 | 6.84134E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.99313E-07 | 0 | 0 |
D/N | rs794727465 | -0.135 | 0.037 | N | 0.18 | 0.118 | 0.184867976434 | gnomAD-2.1.1 | 7.12E-06 | None | None | None | None | N | None | 4.12E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 7.79E-06 | 0 |
D/N | rs794727465 | -0.135 | 0.037 | N | 0.18 | 0.118 | 0.184867976434 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
D/N | rs794727465 | -0.135 | 0.037 | N | 0.18 | 0.118 | 0.184867976434 | gnomAD-4.0.0 | 4.33748E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.93222E-06 | 0 | 0 |
D/Y | rs794727465 | None | 0.992 | N | 0.455 | 0.333 | 0.673333262281 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
D/Y | rs794727465 | None | 0.992 | N | 0.455 | 0.333 | 0.673333262281 | gnomAD-4.0.0 | 1.23928E-06 | None | None | None | None | N | None | 1.33522E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.60061E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
D/A | 0.1941 | likely_benign | 0.1763 | benign | -0.306 | Destabilizing | 0.472 | N | 0.357 | neutral | N | 0.491652713 | None | None | N |
D/C | 0.7478 | likely_pathogenic | 0.6954 | pathogenic | 0.032 | Stabilizing | 0.996 | D | 0.457 | neutral | None | None | None | None | N |
D/E | 0.1501 | likely_benign | 0.1428 | benign | -0.334 | Destabilizing | 0.003 | N | 0.075 | neutral | N | 0.453490999 | None | None | N |
D/F | 0.5872 | likely_pathogenic | 0.55 | ambiguous | -0.157 | Destabilizing | 0.984 | D | 0.455 | neutral | None | None | None | None | N |
D/G | 0.2255 | likely_benign | 0.2031 | benign | -0.53 | Destabilizing | 0.521 | D | 0.341 | neutral | N | 0.512818854 | None | None | N |
D/H | 0.3641 | ambiguous | 0.3063 | benign | -0.123 | Destabilizing | 0.975 | D | 0.401 | neutral | N | 0.503061684 | None | None | N |
D/I | 0.3799 | ambiguous | 0.3338 | benign | 0.242 | Stabilizing | 0.91 | D | 0.47 | neutral | None | None | None | None | N |
D/K | 0.5359 | ambiguous | 0.4481 | ambiguous | 0.328 | Stabilizing | 0.59 | D | 0.343 | neutral | None | None | None | None | N |
D/L | 0.4 | ambiguous | 0.3619 | ambiguous | 0.242 | Stabilizing | 0.742 | D | 0.437 | neutral | None | None | None | None | N |
D/M | 0.6467 | likely_pathogenic | 0.5983 | pathogenic | 0.414 | Stabilizing | 0.996 | D | 0.432 | neutral | None | None | None | None | N |
D/N | 0.1271 | likely_benign | 0.1168 | benign | -0.048 | Destabilizing | 0.037 | N | 0.18 | neutral | N | 0.459105581 | None | None | N |
D/P | 0.5412 | ambiguous | 0.4861 | ambiguous | 0.083 | Stabilizing | 0.004 | N | 0.095 | neutral | None | None | None | None | N |
D/Q | 0.4081 | ambiguous | 0.3553 | ambiguous | -0.006 | Destabilizing | 0.59 | D | 0.346 | neutral | None | None | None | None | N |
D/R | 0.5525 | ambiguous | 0.4723 | ambiguous | 0.457 | Stabilizing | 0.91 | D | 0.436 | neutral | None | None | None | None | N |
D/S | 0.1393 | likely_benign | 0.1285 | benign | -0.158 | Destabilizing | 0.373 | N | 0.291 | neutral | None | None | None | None | N |
D/T | 0.2662 | likely_benign | 0.2361 | benign | 0.022 | Stabilizing | 0.037 | N | 0.198 | neutral | None | None | None | None | N |
D/V | 0.2508 | likely_benign | 0.2217 | benign | 0.083 | Stabilizing | 0.684 | D | 0.439 | neutral | N | 0.511476828 | None | None | N |
D/W | 0.9098 | likely_pathogenic | 0.8828 | pathogenic | 0.007 | Stabilizing | 0.996 | D | 0.535 | neutral | None | None | None | None | N |
D/Y | 0.3129 | likely_benign | 0.2701 | benign | 0.094 | Stabilizing | 0.992 | D | 0.455 | neutral | N | 0.50945732 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.