Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 16243 | 48952;48953;48954 | chr2:178614880;178614879;178614878 | chr2:179479607;179479606;179479605 |
N2AB | 14602 | 44029;44030;44031 | chr2:178614880;178614879;178614878 | chr2:179479607;179479606;179479605 |
N2A | 13675 | 41248;41249;41250 | chr2:178614880;178614879;178614878 | chr2:179479607;179479606;179479605 |
N2B | 7178 | 21757;21758;21759 | chr2:178614880;178614879;178614878 | chr2:179479607;179479606;179479605 |
Novex-1 | 7303 | 22132;22133;22134 | chr2:178614880;178614879;178614878 | chr2:179479607;179479606;179479605 |
Novex-2 | 7370 | 22333;22334;22335 | chr2:178614880;178614879;178614878 | chr2:179479607;179479606;179479605 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | rs72677242 | None | 0.06 | N | 0.311 | 0.278 | 0.15556083564 | gnomAD-4.0.0 | 1.40451E-06 | None | None | None | None | N | None | 3.04414E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 9.16288E-07 | 0 | 0 |
P/H | rs1176398842 | None | 0.999 | D | 0.763 | 0.284 | 0.465633601861 | gnomAD-4.0.0 | 7.02463E-07 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.63685E-05 | None | 0 | 0 | 0 | 0 | 0 |
P/L | rs1176398842 | -0.132 | 0.919 | N | 0.674 | 0.291 | 0.518312163451 | gnomAD-2.1.1 | 8.96E-06 | None | None | None | None | N | None | 4.9E-05 | 0 | None | 0 | 0 | None | 0 | None | 0 | 1.04E-05 | 0 |
P/L | rs1176398842 | -0.132 | 0.919 | N | 0.674 | 0.291 | 0.518312163451 | gnomAD-3.1.2 | 6.59E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 1.95695E-04 | None | 0 | 0 | 0 | 0 | 0 |
P/L | rs1176398842 | -0.132 | 0.919 | N | 0.674 | 0.291 | 0.518312163451 | gnomAD-4.0.0 | 6.3479E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 2.32374E-05 | None | 0 | 0 | 6.90228E-06 | 0 | 1.63698E-05 |
P/S | rs72677242 | -0.517 | 0.307 | N | 0.333 | 0.203 | None | gnomAD-2.1.1 | 3.79376E-03 | None | None | None | None | N | None | 1.46513E-04 | 4.57167E-04 | None | 1.80582E-03 | 0 | None | 5.12013E-04 | None | 1.52761E-02 | 4.67743E-03 | 2.10902E-03 |
P/S | rs72677242 | -0.517 | 0.307 | N | 0.333 | 0.203 | None | gnomAD-3.1.2 | 3.10817E-03 | None | None | None | None | N | None | 4.83E-05 | 1.97031E-04 | 0 | 2.01845E-03 | 0 | None | 1.5867E-02 | 3.16456E-03 | 4.15292E-03 | 1.03691E-03 | 1.91205E-03 |
P/S | rs72677242 | -0.517 | 0.307 | N | 0.333 | 0.203 | None | 1000 genomes | 1.59744E-03 | None | None | None | None | N | None | 0 | 1.4E-03 | None | None | 0 | 6E-03 | None | None | None | 1E-03 | None |
P/S | rs72677242 | -0.517 | 0.307 | N | 0.333 | 0.203 | None | gnomAD-4.0.0 | 2.45184E-03 | None | None | None | None | N | None | 4.03356E-05 | 4.27748E-04 | None | 1.24258E-03 | 0 | None | 1.54746E-02 | 3.33444E-04 | 2.30838E-03 | 5.89146E-04 | 1.88111E-03 |
P/T | None | -0.517 | 0.851 | N | 0.503 | 0.233 | None | gnomAD-2.1.1 | 3.63E-05 | None | None | None | None | N | None | 0 | 3.62E-05 | None | 0 | 0 | None | 0 | None | 0 | 7.37E-05 | 0 |
P/T | None | -0.517 | 0.851 | N | 0.503 | 0.233 | None | gnomAD-3.1.2 | 1.98E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.42E-05 | 0 | 0 |
P/T | None | -0.517 | 0.851 | N | 0.503 | 0.233 | None | gnomAD-4.0.0 | 1.04071E-04 | None | None | None | None | N | None | 0 | 1.86047E-05 | None | 0 | 0 | None | 0 | 0 | 1.39744E-04 | 0 | 1.63634E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P/A | 0.0791 | likely_benign | 0.0883 | benign | -1.022 | Destabilizing | 0.06 | N | 0.311 | neutral | N | 0.442072535 | None | None | N |
P/C | 0.5953 | likely_pathogenic | 0.6062 | pathogenic | -0.667 | Destabilizing | 0.999 | D | 0.791 | deleterious | None | None | None | None | N |
P/D | 0.8008 | likely_pathogenic | 0.8329 | pathogenic | -0.451 | Destabilizing | 0.938 | D | 0.544 | neutral | None | None | None | None | N |
P/E | 0.5528 | ambiguous | 0.6136 | pathogenic | -0.486 | Destabilizing | 0.938 | D | 0.513 | neutral | None | None | None | None | N |
P/F | 0.7291 | likely_pathogenic | 0.7747 | pathogenic | -0.844 | Destabilizing | 0.997 | D | 0.803 | deleterious | None | None | None | None | N |
P/G | 0.4967 | ambiguous | 0.533 | ambiguous | -1.278 | Destabilizing | 0.938 | D | 0.605 | neutral | None | None | None | None | N |
P/H | 0.5463 | ambiguous | 0.5877 | pathogenic | -0.752 | Destabilizing | 0.999 | D | 0.763 | deleterious | D | 0.530081978 | None | None | N |
P/I | 0.3612 | ambiguous | 0.4436 | ambiguous | -0.447 | Destabilizing | 0.991 | D | 0.751 | deleterious | None | None | None | None | N |
P/K | 0.7065 | likely_pathogenic | 0.7286 | pathogenic | -0.76 | Destabilizing | 0.938 | D | 0.52 | neutral | None | None | None | None | N |
P/L | 0.2295 | likely_benign | 0.2814 | benign | -0.447 | Destabilizing | 0.919 | D | 0.674 | prob.neutral | N | 0.473998774 | None | None | N |
P/M | 0.4051 | ambiguous | 0.4753 | ambiguous | -0.409 | Destabilizing | 0.999 | D | 0.762 | deleterious | None | None | None | None | N |
P/N | 0.6091 | likely_pathogenic | 0.6977 | pathogenic | -0.512 | Destabilizing | 0.981 | D | 0.669 | prob.neutral | None | None | None | None | N |
P/Q | 0.3708 | ambiguous | 0.4201 | ambiguous | -0.676 | Destabilizing | 0.991 | D | 0.602 | neutral | None | None | None | None | N |
P/R | 0.599 | likely_pathogenic | 0.6031 | pathogenic | -0.281 | Destabilizing | 0.988 | D | 0.718 | prob.delet. | D | 0.559230561 | None | None | N |
P/S | 0.2322 | likely_benign | 0.2564 | benign | -1.016 | Destabilizing | 0.307 | N | 0.333 | neutral | N | 0.471004915 | None | None | N |
P/T | 0.1896 | likely_benign | 0.2145 | benign | -0.937 | Destabilizing | 0.851 | D | 0.503 | neutral | N | 0.474981688 | None | None | N |
P/V | 0.2279 | likely_benign | 0.2745 | benign | -0.602 | Destabilizing | 0.938 | D | 0.603 | neutral | None | None | None | None | N |
P/W | 0.8986 | likely_pathogenic | 0.9131 | pathogenic | -0.977 | Destabilizing | 0.999 | D | 0.757 | deleterious | None | None | None | None | N |
P/Y | 0.7432 | likely_pathogenic | 0.784 | pathogenic | -0.679 | Destabilizing | 0.997 | D | 0.801 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.