Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 16511 | 49756;49757;49758 | chr2:178613752;178613751;178613276 | chr2:179478479;179478478;179478003 |
N2AB | 14870 | 44833;44834;44835 | chr2:178613752;178613751;178613276 | chr2:179478479;179478478;179478003 |
N2A | 13943 | 42052;42053;42054 | chr2:178613752;178613751;178613276 | chr2:179478479;179478478;179478003 |
N2B | 7446 | 22561;22562;22563 | chr2:178613752;178613751;178613276 | chr2:179478479;179478478;179478003 |
Novex-1 | 7571 | 22936;22937;22938 | chr2:178613752;178613751;178613276 | chr2:179478479;179478478;179478003 |
Novex-2 | 7638 | 23137;23138;23139 | chr2:178613752;178613751;178613276 | chr2:179478479;179478478;179478003 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/K | rs1372771873 | 0.154 | 0.003 | N | 0.288 | 0.078 | 0.275215494804 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.28E-05 | None | 0 | 0 | 0 |
R/K | rs1372771873 | 0.154 | 0.003 | N | 0.288 | 0.078 | 0.275215494804 | gnomAD-4.0.0 | 1.59581E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.43653E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.9469 | likely_pathogenic | 0.9086 | pathogenic | -0.905 | Destabilizing | 0.633 | D | 0.617 | neutral | None | None | None | None | N |
R/C | 0.7213 | likely_pathogenic | 0.5493 | ambiguous | -0.875 | Destabilizing | 0.996 | D | 0.704 | prob.neutral | None | None | None | None | N |
R/D | 0.9866 | likely_pathogenic | 0.9759 | pathogenic | -0.053 | Destabilizing | 0.923 | D | 0.629 | neutral | None | None | None | None | N |
R/E | 0.9278 | likely_pathogenic | 0.8803 | pathogenic | 0.087 | Stabilizing | 0.633 | D | 0.602 | neutral | None | None | None | None | N |
R/F | 0.9639 | likely_pathogenic | 0.9213 | pathogenic | -0.72 | Destabilizing | 0.987 | D | 0.687 | prob.neutral | None | None | None | None | N |
R/G | 0.9354 | likely_pathogenic | 0.9023 | pathogenic | -1.223 | Destabilizing | 0.722 | D | 0.613 | neutral | N | 0.466423357 | None | None | N |
R/H | 0.4137 | ambiguous | 0.3119 | benign | -1.534 | Destabilizing | 0.961 | D | 0.663 | neutral | None | None | None | None | N |
R/I | 0.8236 | likely_pathogenic | 0.6641 | pathogenic | -0.046 | Destabilizing | 0.949 | D | 0.687 | prob.neutral | N | 0.478166988 | None | None | N |
R/K | 0.2759 | likely_benign | 0.1929 | benign | -0.819 | Destabilizing | 0.003 | N | 0.288 | neutral | N | 0.429028767 | None | None | N |
R/L | 0.7798 | likely_pathogenic | 0.6561 | pathogenic | -0.046 | Destabilizing | 0.775 | D | 0.613 | neutral | None | None | None | None | N |
R/M | 0.8672 | likely_pathogenic | 0.7364 | pathogenic | -0.412 | Destabilizing | 0.996 | D | 0.678 | prob.neutral | None | None | None | None | N |
R/N | 0.9734 | likely_pathogenic | 0.9522 | pathogenic | -0.373 | Destabilizing | 0.775 | D | 0.611 | neutral | None | None | None | None | N |
R/P | 0.9663 | likely_pathogenic | 0.9367 | pathogenic | -0.312 | Destabilizing | 0.961 | D | 0.695 | prob.neutral | None | None | None | None | N |
R/Q | 0.4309 | ambiguous | 0.33 | benign | -0.5 | Destabilizing | 0.633 | D | 0.632 | neutral | None | None | None | None | N |
R/S | 0.9649 | likely_pathogenic | 0.9418 | pathogenic | -1.176 | Destabilizing | 0.565 | D | 0.609 | neutral | N | 0.477276774 | None | None | N |
R/T | 0.8411 | likely_pathogenic | 0.7277 | pathogenic | -0.841 | Destabilizing | 0.722 | D | 0.629 | neutral | N | 0.39631603 | None | None | N |
R/V | 0.8543 | likely_pathogenic | 0.7322 | pathogenic | -0.312 | Destabilizing | 0.923 | D | 0.641 | neutral | None | None | None | None | N |
R/W | 0.709 | likely_pathogenic | 0.5514 | ambiguous | -0.363 | Destabilizing | 0.996 | D | 0.689 | prob.neutral | None | None | None | None | N |
R/Y | 0.9185 | likely_pathogenic | 0.8333 | pathogenic | -0.082 | Destabilizing | 0.987 | D | 0.699 | prob.neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.