Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 16957 | 51094;51095;51096 | chr2:178611260;178611259;178611258 | chr2:179475987;179475986;179475985 |
N2AB | 15316 | 46171;46172;46173 | chr2:178611260;178611259;178611258 | chr2:179475987;179475986;179475985 |
N2A | 14389 | 43390;43391;43392 | chr2:178611260;178611259;178611258 | chr2:179475987;179475986;179475985 |
N2B | 7892 | 23899;23900;23901 | chr2:178611260;178611259;178611258 | chr2:179475987;179475986;179475985 |
Novex-1 | 8017 | 24274;24275;24276 | chr2:178611260;178611259;178611258 | chr2:179475987;179475986;179475985 |
Novex-2 | 8084 | 24475;24476;24477 | chr2:178611260;178611259;178611258 | chr2:179475987;179475986;179475985 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/F | rs372013419 | -1.583 | 0.934 | N | 0.704 | 0.251 | 0.463328977263 | gnomAD-2.1.1 | 4.05E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.96E-06 | 0 |
I/F | rs372013419 | -1.583 | 0.934 | N | 0.704 | 0.251 | 0.463328977263 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
I/F | rs372013419 | -1.583 | 0.934 | N | 0.704 | 0.251 | 0.463328977263 | gnomAD-4.0.0 | 1.24066E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.69616E-06 | 0 | 0 |
I/N | rs368450275 | -1.759 | 0.989 | D | 0.845 | 0.675 | 0.803589953288 | gnomAD-2.1.1 | 4.05E-06 | None | None | None | None | I | None | 0 | 2.92E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
I/T | rs368450275 | -2.236 | 0.801 | D | 0.707 | 0.542 | None | gnomAD-2.1.1 | 2.84E-05 | None | None | None | None | I | None | 0 | 0 | None | 9.98E-05 | 0 | None | 0 | None | 0 | 5.37E-05 | 0 |
I/T | rs368450275 | -2.236 | 0.801 | D | 0.707 | 0.542 | None | gnomAD-3.1.2 | 1.32E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
I/T | rs368450275 | -2.236 | 0.801 | D | 0.707 | 0.542 | None | gnomAD-4.0.0 | 9.92491E-06 | None | None | None | None | I | None | 0 | 0 | None | 3.38203E-05 | 2.24346E-05 | None | 7.8235E-05 | 0 | 6.78448E-06 | 1.10006E-05 | 0 |
I/V | rs372013419 | -1.385 | 0.005 | N | 0.246 | 0.118 | None | gnomAD-2.1.1 | 1.62E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 4.67E-05 | 1.79E-05 | 1.67336E-04 |
I/V | rs372013419 | -1.385 | 0.005 | N | 0.246 | 0.118 | None | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
I/V | rs372013419 | -1.385 | 0.005 | N | 0.246 | 0.118 | None | gnomAD-4.0.0 | 1.79895E-05 | None | None | None | None | I | None | 1.33636E-05 | 0 | None | 0 | 0 | None | 1.5647E-05 | 1.64799E-04 | 2.03539E-05 | 1.10028E-05 | 1.60364E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I/A | 0.4845 | ambiguous | 0.453 | ambiguous | -2.205 | Highly Destabilizing | 0.525 | D | 0.662 | neutral | None | None | None | None | I |
I/C | 0.8608 | likely_pathogenic | 0.8764 | pathogenic | -1.503 | Destabilizing | 0.998 | D | 0.758 | deleterious | None | None | None | None | I |
I/D | 0.9891 | likely_pathogenic | 0.9842 | pathogenic | -1.973 | Destabilizing | 0.991 | D | 0.845 | deleterious | None | None | None | None | I |
I/E | 0.9688 | likely_pathogenic | 0.9601 | pathogenic | -1.849 | Destabilizing | 0.974 | D | 0.827 | deleterious | None | None | None | None | I |
I/F | 0.292 | likely_benign | 0.2912 | benign | -1.34 | Destabilizing | 0.934 | D | 0.704 | prob.neutral | N | 0.488154198 | None | None | I |
I/G | 0.9254 | likely_pathogenic | 0.916 | pathogenic | -2.666 | Highly Destabilizing | 0.974 | D | 0.819 | deleterious | None | None | None | None | I |
I/H | 0.9603 | likely_pathogenic | 0.9543 | pathogenic | -1.958 | Destabilizing | 0.998 | D | 0.834 | deleterious | None | None | None | None | I |
I/K | 0.933 | likely_pathogenic | 0.9147 | pathogenic | -1.767 | Destabilizing | 0.974 | D | 0.819 | deleterious | None | None | None | None | I |
I/L | 0.1363 | likely_benign | 0.1398 | benign | -0.936 | Destabilizing | 0.002 | N | 0.265 | neutral | N | 0.477970219 | None | None | I |
I/M | 0.1158 | likely_benign | 0.1173 | benign | -0.8 | Destabilizing | 0.934 | D | 0.691 | prob.neutral | D | 0.522440731 | None | None | I |
I/N | 0.9103 | likely_pathogenic | 0.8924 | pathogenic | -1.8 | Destabilizing | 0.989 | D | 0.845 | deleterious | D | 0.645584952 | None | None | I |
I/P | 0.9316 | likely_pathogenic | 0.9195 | pathogenic | -1.333 | Destabilizing | 0.991 | D | 0.845 | deleterious | None | None | None | None | I |
I/Q | 0.9431 | likely_pathogenic | 0.9328 | pathogenic | -1.807 | Destabilizing | 0.991 | D | 0.844 | deleterious | None | None | None | None | I |
I/R | 0.9019 | likely_pathogenic | 0.8784 | pathogenic | -1.315 | Destabilizing | 0.974 | D | 0.845 | deleterious | None | None | None | None | I |
I/S | 0.7783 | likely_pathogenic | 0.7458 | pathogenic | -2.482 | Highly Destabilizing | 0.891 | D | 0.805 | deleterious | D | 0.524915379 | None | None | I |
I/T | 0.4464 | ambiguous | 0.5293 | ambiguous | -2.219 | Highly Destabilizing | 0.801 | D | 0.707 | prob.neutral | D | 0.604451383 | None | None | I |
I/V | 0.0766 | likely_benign | 0.0803 | benign | -1.333 | Destabilizing | 0.005 | N | 0.246 | neutral | N | 0.516799116 | None | None | I |
I/W | 0.9414 | likely_pathogenic | 0.9355 | pathogenic | -1.565 | Destabilizing | 0.998 | D | 0.831 | deleterious | None | None | None | None | I |
I/Y | 0.8597 | likely_pathogenic | 0.8439 | pathogenic | -1.317 | Destabilizing | 0.974 | D | 0.776 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.