Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17193 | 51802;51803;51804 | chr2:178609846;178609845;178609844 | chr2:179474573;179474572;179474571 |
N2AB | 15552 | 46879;46880;46881 | chr2:178609846;178609845;178609844 | chr2:179474573;179474572;179474571 |
N2A | 14625 | 44098;44099;44100 | chr2:178609846;178609845;178609844 | chr2:179474573;179474572;179474571 |
N2B | 8128 | 24607;24608;24609 | chr2:178609846;178609845;178609844 | chr2:179474573;179474572;179474571 |
Novex-1 | 8253 | 24982;24983;24984 | chr2:178609846;178609845;178609844 | chr2:179474573;179474572;179474571 |
Novex-2 | 8320 | 25183;25184;25185 | chr2:178609846;178609845;178609844 | chr2:179474573;179474572;179474571 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/S | rs759285989 | -0.009 | 0.012 | N | 0.365 | 0.093 | 0.0482279557977 | gnomAD-2.1.1 | 1.61E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 3.56E-05 | 0 |
R/S | rs759285989 | -0.009 | 0.012 | N | 0.365 | 0.093 | 0.0482279557977 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
R/S | rs759285989 | -0.009 | 0.012 | N | 0.365 | 0.093 | 0.0482279557977 | gnomAD-4.0.0 | 9.92025E-06 | None | None | None | None | N | None | 2.67401E-05 | 0 | None | 0 | 0 | None | 0 | 3.29164E-04 | 7.63175E-06 | 1.0983E-05 | 3.20472E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
R/A | 0.2238 | likely_benign | 0.2383 | benign | 0.071 | Stabilizing | 0.016 | N | 0.383 | neutral | None | None | None | None | N |
R/C | 0.1969 | likely_benign | 0.1923 | benign | -0.287 | Destabilizing | 0.676 | D | 0.298 | neutral | None | None | None | None | N |
R/D | 0.3923 | ambiguous | 0.4268 | ambiguous | -0.353 | Destabilizing | 0.038 | N | 0.371 | neutral | None | None | None | None | N |
R/E | 0.2041 | likely_benign | 0.2275 | benign | -0.303 | Destabilizing | 0.016 | N | 0.319 | neutral | None | None | None | None | N |
R/F | 0.406 | ambiguous | 0.4086 | ambiguous | -0.22 | Destabilizing | 0.356 | N | 0.307 | neutral | None | None | None | None | N |
R/G | 0.16 | likely_benign | 0.175 | benign | -0.079 | Destabilizing | 0.024 | N | 0.321 | neutral | N | 0.460123932 | None | None | N |
R/H | 0.0972 | likely_benign | 0.0981 | benign | -0.57 | Destabilizing | 0.356 | N | 0.281 | neutral | None | None | None | None | N |
R/I | 0.1646 | likely_benign | 0.1711 | benign | 0.423 | Stabilizing | 0.12 | N | 0.354 | neutral | None | None | None | None | N |
R/K | 0.0688 | likely_benign | 0.0668 | benign | -0.18 | Destabilizing | None | N | 0.111 | neutral | N | 0.445559911 | None | None | N |
R/L | 0.1869 | likely_benign | 0.1974 | benign | 0.423 | Stabilizing | 0.038 | N | 0.339 | neutral | None | None | None | None | N |
R/M | 0.1709 | likely_benign | 0.1774 | benign | -0.092 | Destabilizing | 0.295 | N | 0.31 | neutral | D | 0.523695407 | None | None | N |
R/N | 0.241 | likely_benign | 0.256 | benign | -0.145 | Destabilizing | 0.001 | N | 0.238 | neutral | None | None | None | None | N |
R/P | 0.6566 | likely_pathogenic | 0.6698 | pathogenic | 0.324 | Stabilizing | 0.356 | N | 0.353 | neutral | None | None | None | None | N |
R/Q | 0.0839 | likely_benign | 0.0866 | benign | -0.157 | Destabilizing | 0.038 | N | 0.304 | neutral | None | None | None | None | N |
R/S | 0.2537 | likely_benign | 0.2695 | benign | -0.296 | Destabilizing | 0.012 | N | 0.365 | neutral | N | 0.465625752 | None | None | N |
R/T | 0.1211 | likely_benign | 0.1279 | benign | -0.136 | Destabilizing | None | N | 0.245 | neutral | N | 0.442751679 | None | None | N |
R/V | 0.1984 | likely_benign | 0.2056 | benign | 0.324 | Stabilizing | 0.038 | N | 0.361 | neutral | None | None | None | None | N |
R/W | 0.238 | likely_benign | 0.2435 | benign | -0.406 | Destabilizing | 0.828 | D | 0.323 | neutral | N | 0.494588374 | None | None | N |
R/Y | 0.3171 | likely_benign | 0.314 | benign | 0.002 | Stabilizing | 0.356 | N | 0.321 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.