Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 17442 | 52549;52550;52551 | chr2:178608687;178608686;178608685 | chr2:179473414;179473413;179473412 |
N2AB | 15801 | 47626;47627;47628 | chr2:178608687;178608686;178608685 | chr2:179473414;179473413;179473412 |
N2A | 14874 | 44845;44846;44847 | chr2:178608687;178608686;178608685 | chr2:179473414;179473413;179473412 |
N2B | 8377 | 25354;25355;25356 | chr2:178608687;178608686;178608685 | chr2:179473414;179473413;179473412 |
Novex-1 | 8502 | 25729;25730;25731 | chr2:178608687;178608686;178608685 | chr2:179473414;179473413;179473412 |
Novex-2 | 8569 | 25930;25931;25932 | chr2:178608687;178608686;178608685 | chr2:179473414;179473413;179473412 |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/V | rs2055526499 | None | 0.003 | N | 0.385 | 0.067 | 0.514240282655 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 2.06954E-04 | 0 |
L/V | rs2055526499 | None | 0.003 | N | 0.385 | 0.067 | 0.514240282655 | gnomAD-4.0.0 | 6.20279E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 1.09885E-04 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.2584 | likely_benign | 0.2762 | benign | -2.788 | Highly Destabilizing | 0.404 | N | 0.666 | neutral | None | None | None | None | N |
L/C | 0.3447 | ambiguous | 0.3524 | ambiguous | -1.688 | Destabilizing | 0.973 | D | 0.701 | prob.neutral | None | None | None | None | N |
L/D | 0.7162 | likely_pathogenic | 0.7415 | pathogenic | -3.29 | Highly Destabilizing | 0.906 | D | 0.785 | deleterious | None | None | None | None | N |
L/E | 0.2882 | likely_benign | 0.3043 | benign | -3.006 | Highly Destabilizing | 0.906 | D | 0.756 | deleterious | None | None | None | None | N |
L/F | 0.1579 | likely_benign | 0.1601 | benign | -1.638 | Destabilizing | 0.782 | D | 0.62 | neutral | N | 0.448850932 | None | None | N |
L/G | 0.6385 | likely_pathogenic | 0.6719 | pathogenic | -3.343 | Highly Destabilizing | 0.906 | D | 0.749 | deleterious | None | None | None | None | N |
L/H | 0.265 | likely_benign | 0.2459 | benign | -2.929 | Highly Destabilizing | 0.988 | D | 0.787 | deleterious | N | 0.448504215 | None | None | N |
L/I | 0.0692 | likely_benign | 0.0685 | benign | -1.126 | Destabilizing | 0.001 | N | 0.321 | neutral | N | 0.376316043 | None | None | N |
L/K | 0.4522 | ambiguous | 0.44 | ambiguous | -2.012 | Highly Destabilizing | 0.906 | D | 0.713 | prob.delet. | None | None | None | None | N |
L/M | 0.1008 | likely_benign | 0.1007 | benign | -1.116 | Destabilizing | 0.826 | D | 0.676 | prob.neutral | None | None | None | None | N |
L/N | 0.4333 | ambiguous | 0.4437 | ambiguous | -2.555 | Highly Destabilizing | 0.967 | D | 0.797 | deleterious | None | None | None | None | N |
L/P | 0.9749 | likely_pathogenic | 0.9783 | pathogenic | -1.67 | Destabilizing | 0.957 | D | 0.789 | deleterious | N | 0.472761136 | None | None | N |
L/Q | 0.1723 | likely_benign | 0.1631 | benign | -2.289 | Highly Destabilizing | 0.967 | D | 0.753 | deleterious | None | None | None | None | N |
L/R | 0.3416 | ambiguous | 0.3266 | benign | -1.912 | Destabilizing | 0.879 | D | 0.745 | deleterious | N | 0.430398457 | None | None | N |
L/S | 0.2685 | likely_benign | 0.2879 | benign | -3.122 | Highly Destabilizing | 0.826 | D | 0.683 | prob.neutral | None | None | None | None | N |
L/T | 0.1562 | likely_benign | 0.1641 | benign | -2.699 | Highly Destabilizing | 0.575 | D | 0.663 | neutral | None | None | None | None | N |
L/V | 0.0711 | likely_benign | 0.0728 | benign | -1.67 | Destabilizing | 0.003 | N | 0.385 | neutral | N | 0.417834592 | None | None | N |
L/W | 0.3582 | ambiguous | 0.3357 | benign | -2.079 | Highly Destabilizing | 0.991 | D | 0.733 | prob.delet. | None | None | None | None | N |
L/Y | 0.3452 | ambiguous | 0.3451 | ambiguous | -1.851 | Destabilizing | 0.906 | D | 0.723 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.